DreINT0160696 @ danRer10
Intron Retention
Gene
ENSDARG00000069339 | tbc1d24
Description
TBC1 domain family, member 24 [Source:ZFIN;Acc:ZDB-GENE-050809-65]
Coordinates
chr24:39244948-39248438:+
Coord C1 exon
chr24:39244948-39245990
Coord A exon
chr24:39245991-39248279
Coord C2 exon
chr24:39248280-39248438
Length
2289 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTCTCATTTGATCTCTCCAGGCA
3' ss Score
9.1
Exon sequences
Seq C1 exon
CTAGAACAGAATGGCCGGCTAGTTCCCCTCATTCTCTCTTCCGTTCAGCGTGTGAGGTCAGAGGTCATGGCTGGGGATTGCGGCGTATTCGTGGACTGGTCTCAGATGGGCGATGTGTCTCGAGACGCAGCTCCTGGTAAGACTGAATATAAAGACTTGAAGGAGCTGAAGCAGCATGCGCGCTCAGGCCAATGGGCGAAAAACCACAGCCAGCGCTCTGCCGTTTACCAACACCTGCTTAAAGCCCTGCCCTGTCGCACAGTCACCCCTGACGCTGAGGTTTACCGTGATATCGTGGGTAATTCCACCAGCAAACGTAATCCATCTGCGTATCCATTACCGGAGTTTGTTGATGGGACTGCAGTGCCGCAGTACTGTCTAAAAGCAGAGTCTATAGGCTCAGTGCATGCTGTGATTTCCTGCGTGGCAGGGCAGTTTCCGGATATCTCACACTGTCCCTCATTGCCTGCTGTGACCGCATTGATGATGCACTGGAGCCCGGATGAAGCTCAATGCTTCGAGAGCGTCAGCCGAATGTTAGCATGCAACGAACCAGGCCGGCGCTTACTAGATCAAACGTTCCTCGCGTATGAATCCGCATGCATGACCTTCGGCGACCTCGTGCATAAATACTGCCCGGCTGCGCATAAGCTGATGGTTGCCACGGCGACGGATGTACTGGAGGTGTACTCCGACTGGCAGCGGTGGGTTTTCGGAGATCTGCCGTTCAGCTTTGCGGCGCGCGTGCTGGATGTGTTTTTGGTGGAGGGCTATAAGGTGCTTTATCGCGTCGCTTTGGCCATTTTGAAGTTTTACCGCAAGCAGTTTGTGGCCTCCAACTCGGCTCCGAGCAAGCAGGACTCGGCGGCGGTCAGGAGGGACATTCAGACGTTTGTGCAGAGCATTGGGAAGAGCGTGACGCCGGATAAACTGCTGGAAAAGGCGTTTTCTATTCGTCTCTTCAGCCGGAAGGAGATCACGCTGCTGCAGCTGGCCAATGAGAAATCACTGCAGCAGAAAGGCATCACTGTCAAGCAGAAGAG
Seq A exon
GTAAGGGACGGGTTAGCGTTAATATTTGTAGCCAGTATGAAAAAAAAGAACGTTACATGGAAAATCGAATCAGTGAAATGTTAATAATAACATTGTTTTATAAAGGAAATGGAAATGTATTGCTTAAACCATTATGTGTAACATTAAACATCAATGCTTAATTGCATTAGCTATGTTTCCATCAAATAATGCGAATTAAATTTGCGCAAAACTGGACTATCGCACTTGCAGTTGCTTATGTCTGAATGGCTTTAATGCAGTCACAGGCCTCAAAAACACATGCAAATGATGCATTCTAATCCAATCAGTAAAATGTCAATAATAACTTTGTTTTATAAAGGACTTTTAAATCTAGTTATAACAGATATAAATGTATTGTTTAAACAAGTGGTTCTCAAATTTTTTTCATCAAGTACCACCTCAGAAAAAAATTGTCTCTCCAAGTACCACCAAAATGAGCAGTATTGAACTACAGTAGTGTAGTAGGCCCAGTAAAGCAGCTACAACTCTGCACAGTTAAAAAAATGTGGCAAATTACCTATAAATATAGGCTATATGTCATATATGGCATACTATATACATCATTTTTGATAAATTTAGAAATATATGTAGCATGTACATGTCATATTTCATTCCTCCGTGTACCACTAGAAGGAAGCCTGGGTACCACTAGTGGTACACGTACCACAGATTGAGAACCACTGGTTTAAACCATTATATTTAACATTAAACATTAATTTTAACCTTAATATTAATCAAGTATAATAATTAAAGGTCTGCTTTATTTAATAAGACTAGCTAATGTTTAGCTATGTTTCCATCAAAAATTGCCAATTAAATTGATGTGCAAAACTGGAATATCGGATAAAAGATGTGTGAATAAAGCAGCGTTTCCATCCAACGAGCCAAAGCGAACGAAATCGGCCTTTACTGATTAACTGGCGCCAAATATCAACAGTAAAAACGGAATTTACTGCAGTAGGAGACGCTGCGTGAATCTTTTCTTTATTTAATAAATGACCTGCCTCTTAGAAGGCAATGCGGACATGCAATGAATGTGTGGTGGCGTTTGAAGTCGTGAGCCGTGGAGCACAGACACTCTGGATTTATACTTTCGCCTGTCGCCTTATCGCGCTCTTCTGCTGCCTGCATGTGCACTCCATGAAACGGTTTTTATACTTGACGTGTTCGCCATTGTGATATGCTTTAAAACGACAGGGGGCGGTCAAAAGGAGCTGACCGTAAAGTCAGACGGATTAACAGAGAAGTAGGATGTTTACTGAACTACGTCATATCATTAATATCGTTCAGTATTTTTTAAACTAATTATTTTCATTGTTTTTATAAATTATTATAGTGATTATAAAGTTTTATAACTTCAAGAATTTTTATTATCAAACTTTGATGCATCACTTGCTTTTGTTCAAATCTCAATCTACAAGCATGAATGAATGCAATAAAATAAATGAAACAAATGAAATAAACTGTTTTATTGTTTTTCTGAGAAGTCTAATAGTATTCCGGTACAGTAATTGAATAATCAAGTGTGAAATAATACTGCATAGTCTTCCAAAGGGTGCAATTGCTTATAACTGAATGGCTTTAAAATCCTCATGCAGTCACAGGCCTCAAAAACACATGCAAATGATACATCATAATTACGATTCAACATTGCAAATCCTGCGATGTGACTATTGTGAATATCAATGCTGGAAACAATATATTGTGCGGCCCTAGTTACATGTAATTATGCATAATTCATTGTAATTACTATAGTAAGTGCAAGAAACATGTGGAACGATGTCATCTTAAATTAAAGGGTTACCCAAAGTATGTTCCCTTTTGAATTCTCAAGATCATTTCAATATTTAAAACGTAGCTTCATTATATTGACTGTGAAGTCTCAATTTTAGCTCTTTACTACTGTTTAGCGTGTGACTATTTTGTGTTCGCCTATATTTTTCCAATGTTCCTCTTATTTGCTTGTCGTTTTCATCTTCCTAATGTTTCCTACTTCCCTAAATTTAATTTTACTCACATTTGCATCACTGTTGTTTTTTTCATTGTCTTTTTCCCCCCATTTCTCCTGCTTTCCTCTTTCTGCACTGTCCTTTAGCTCTATCAAAAGGTGGGTGTCTTCATCATCATCATCATCATCATCTTCACACACTTTACTTTTTCAGAATAAACCATTTCTGGCCATTTGTTTATTGTTGTGTTGTAGGTTTACTCATGCACAGTGAATGTCAAATCAACCTAGTTGCTCATCCTCTCATTTGATCTCTCCAG
Seq C2 exon
GCAGAATGTCCAGCTAGCCGTGAACGCAGATAATTTCAGCTCGGAGATCGTCAGCGCTAAAGAGATCCGAGATATCTGGTCGTGGATCCCGGAGCGATTCGCTTTGTGTCAGCCACAGCTGCTTTTCACCACATCTACACACGGCTGCAGCCTCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069339:ENSDART00000155346:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=60.1)
A:
NA
C2:
PF0753411=TLD=PU(14.1=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]