GgaINT0012580 @ galGal4
Intron Retention
Gene
ENSGALG00000009217 | TBC1D24
Description
Gallus gallus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001257271]
Coordinates
chr14:13937841-13941154:-
Coord C1 exon
chr14:13940132-13941154
Coord A exon
chr14:13937862-13940131
Coord C2 exon
chr14:13937841-13937861
Length
2270 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTACATTCATTTCTAAGTAGAAA
3' ss Score
3.2
Exon sequences
Seq C1 exon
GAAAAGCCACAGGTCATTTAATGATCACTTCTCATAGCTTTTCTCATATGCTTCCCTTGGAGTCATGGATGAATACAACCGCTTTGTGGATTGGGACAAAATGGATGTTACTGTCCAGAGCCAGGACATAAAGGAGCTGACCTGCACGGAGTTCCAGGAGCTGAAGCAGCTGGCCCGGCAAGGCTACTGGGCCAAGAACCACTCGCTGAGAGCCAAAGTGTACCACAAGCTGATTAGCAATATCCCATGTCGCACAGTGACCCCAGATGCAAATGTTTACCGGGACATTGTGGTGAAGATAGTTGGAAAGCGTAGCAGTAGCTCCCTTCCACTGCCAGAGTTTGTGGACGACAGCCTTGTCCCCACGTACTGCTTGAATGCAGAAGGCATTGGGGCAGTTAGGAAGATTATACTGTGCATTGCAAATCAGTTCCCAGACATATCGTTCTGCCCTGCGCTGCCTTCTGTGATAGCTTTGCTCCTCCACTACAGCAAGGATGAGGCAGAGTGCTTTGAACAGGTTTGTCGCATCCTTGCTTGCAACGACCCATCCAAGCGACTCATCGATCAGACCTTCCTGGCTTTTGAGTCCTCCTGCATGACCTTTGGGGACCTGGTGAACAAGTACTGCCAGGCAGCACACAAGCTGATGGTGGCAGTGTCTGAGGATGTGTTGGAGGTGTACTCAGACTGGCAGCGGTGGCTCTTTGGAGAGCTGCCCATGCTTTACATCGCTCGGGTCTTCGATGTGTTTCTGGTGGAGGGCTACAAAGTTCTCTATCGTGTTGCGTTGGCTATTCTGAAGTTTTTTCACAAAGTCAGAGCTGGGCAGCCCATGGAGTCGGACAGCGTGCAGCAGGATATCCGAGCTTTTGTCAGAGACATTGCTAAGTCAGTGTCTCCAGAGAGGCTTCTGGAAAAAGCCTTTGCTATCCGCCTGTTCTCACGGAAGGAGATCCAGCTGCTGCAGATGGCCAATGAGAAAGCTTTACAGCAGAAGGGCATCACAGTCAAACAGAAAAG
Seq A exon
GTAAGGGTCTCCCAGCAGGTAGTCCGAGTGAGCTCCTCAAACACAAGATCCTGAGGTTCCTCACTGATGAGTGGTCAGCCAGCCCTGGGCTGACTGATGGGGAAGAAGGAGCGCTCCACTGGTGCACACTGGGTATCTGCTGACTTTCTCTCTGTGCACTTGATTAGAAAAAGTCAGCAGCCCCAAGTTAAGTATTGCTGGGATTCTAGCTGGAAGTATGCTGTATAATTACTTTTTAGAGGTTCATGTTCATCTCATCTCCAAAAGTGCCTTTCACAGGCTGCTTCTTAAGCAGGAAAGCATTTAAAGCTGGAAAAGCAGCCAATAAATGATTGAGAAGAAAAGTACCCAAACAAATATGACAGTAATTAATTCTTAAATATGAGATTATTCATATAAAAGATCAATTTTGTGGTGTCTGGTACCATGTACTCGGCTGTTCCTGTACTGTAAGTAGACAAACGCTGTCTGAGGTGGAAATGTTTTGCTCACCTGCAGAGTTACTCTAGCAGAATAAGGAAGAAGTAGGTCATGCATAGTTTTTAAAGTAGCTTGACTGCAAGCCTCTTGAAAATCAAAGGCGGTACCATAAGTGACAGCAGAACTTCTTTACATGTATGGTGTATGCATGAAGTTCCCAGTCTTCTCCAAGGGTATATTTTTACAGCTGTAGTTTGGTTTACAGCTGGCTTGTGCTTTACCTTGCTTGTCTCTTGGAAGAGACTGTTCTGCCCGGCTCAACGCCTTTAGCAACTGGGAGGTTGTGTTAGGTACAGCTCTGATCATTACATTCAGGACTTGCAAAAAGAAGTACTGACTCTTCCTGTCTGGGAATATTACCTTTCCTTCCTGTGCTGAAGTTCAGAAGAGCTGTAATATCCTTTCTGAGAATATGAGTATATTGTTCAGCAACAGGATGAAAGTTAAGCAAAAGCTCCTGTTGAAATGACGGATGGCTTAGGTTGGAAGGGACCTTAAAGATCATCTACGTCCACCCCCCTACCCTGGGTTGCCATCCACGAGATCAGGCTGCTCAGGGCCCCACCCAGCTTGGCCTTGAAAGGTGTCGTAGAGGTATTGTTGCTCAGAACAGAGGTACCTTCCAAGCAAAATTCAGTTAGTAAATATCCACGTAACTCCTGTAGTAACTGATTCACCAAACCATGTTACTAATGGAAAACTTCTATCCTCTCTCAGTTACTTTTGTAAACATACCAGAGCTCCCCATCATCCATTGGCTTGGCACTGCTGTCTGTGGACGAGGCTCACTTTGGATCCTGCTGTAGGCAGATGTGGTTTCTGGAGAAGTGAGCTTTTCTCCAGTGCTCAATAGGATGGCAGTTTTCTTGTCCAGATATGTGTTTGGCCTATGCAAAGAGGTGATGGGTTATTTTCCAATCCAGTAACTGAGCAGGCAGCAAAAAGGGGGAAAAAAACAGAAGGGAGAACGTAGAAAATATGTTAACAGAGCTTGTCTTTTTGTTTTCCTCTTGCTTGGTGATTCAAATCAAACTGTACTTTTGTTTCTTTCTAGGCTCCTTACGTTCACTTTGTCAAGGCTATAGAAAATCACTGATCTTTTTCTGTCTTTTTTTGTCTTCCTCCTCATACGTTCTCCTTCTGTCAATTCCATACCCACTGCACCCCTCCTGTTTGCAGTGTCACATCTCCAAAAAGGTAGGTTCCAACACTTGGATCTCTGCGCTCTGCTCGCTTCTTCTGTCTTTGCCTGGCTTTTATTCCGGAGCTGTCACTGTTGCTAATGCTGGGGCAAGAAAAGCAAGGCAGCAATTACGGCATCAGATTGCTGTGTAACATCTGCATACACTCTTACAAAGTTAGTTCAAAGCACCTGCAGAGTTGTGAGATCTGGGGGTGTCGTGGGCACAGCTGCTCAGCACGGTGGTTTGCATGCAGTGGTGCAAATCTGTATGCCCCAGGATGGGAAAGCTTGGTGTTAACGAGCAGATTTAAGTCATCACGATGCTGGAAGAAAAACTGTGGTACGTGTTTTGTTGGTTTGGTTGGGGGGCTGTGGGGTTTTGTTGTGGGGTTTTGTTTTTGTTGTTCCTGTTGCTTTTTATACCAGTAGGTATTGCCCCCATTCAGACCTGGCATGTGCTGTTGCAAACTTATGCAAGACGTGCTTGATTTTTTTCTTTGCAAGCTTTCTGCAGCTGATGGAAAGGCTGTTGGACTGAGCCCAACTTGGCACACTCCTGAAAGTAACTTGTCTCCATTTCTACTACGTTACATTCATTTCTAAGTAG
Seq C2 exon
AAATACTTCTGTGTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217:ENSGALT00000015002:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=65.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]