HsaEX0063860 @ hg38
Exon Skipping
Gene
ENSG00000162065 | TBC1D24
Description
TBC1 domain family member 24 [Source:HGNC Symbol;Acc:HGNC:29203]
Coordinates
chr16:2496034-2502014:+
Coord C1 exon
chr16:2496034-2496331
Coord A exon
chr16:2497710-2497727
Coord C2 exon
chr16:2501770-2502014
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCCTGTTTTTCAGTGT
3' ss Score
10.22
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGTGTGAGATGGCAGACAGGTTTGCAGGAAACCCTCAGAAAGGGGGCTGGAGGATTTAGCCACTCTGTCCTCCCCTTCCGGCAGTCCAGGGCCTCCTCCCGAGCACAGCGGCGCTATGGACTCTCCAGGATACAACTGCTTCGTGGACAAAGACAAGATGGACGCTGCCATCCAGGACCTGGGGCCCAAGGAGCTGAGCTGCACTGAACTGCAGGAACTGAAGCAGCTGGCGCGCCAGGGCTACTGGGCCCAAAGCCACGCCCTGCGGGGAAAGGTGTACCAGCGCCTGATCCGGGAC
Seq A exon
TGTGTCACTTTCTAAAAG
Seq C2 exon
AGGCCCTCAGGGACCGACCCAGACCAGCAAGCTCCATTTCCAGGGGTCTGCCCAGAGAAGCCTGGACCCAGGGGGCTTCTCAGCTCCCCTCCCTTCCAGCCCAGGCCTCCTTGAGCTCCTGTAGCCTCTGCAGCTGCCCATTTCACCTCTTTGTCATTGCAATGACCTGGGGCCCAGGGTCACGCCCAAGCCCCTCTTTGTGGCATGCTCATCTCAGTGCAGCCCCAACTGCTTCTCTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162065_MULTIEX1-1/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=64.6)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACTGGGCCCAAAGC
R:
GACCCCTGGAAATGGAGCTTG
Band lengths:
108-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development