MmuINT0157417 @ mm9
Intron Retention
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24321326-24323146:-
Coord C1 exon
chr17:24322149-24323146
Coord A exon
chr17:24321344-24322148
Coord C2 exon
chr17:24321326-24321343
Length
805 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TGCTTCCTCCTGTTTCTCAGTGT
3' ss Score
8.1
Exon sequences
Seq C1 exon
CCTAGGACCTGCCTTGTGGGCACACTGGGCACCATGGACCCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAGATGGATGCATCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTGCACGGAGCTACAGGAGCTGAAGCAACTGGCACGGCAGGGTTACTGGGCTCAGAGCCACACCCTGCGCGGGAAAGTGTACCAGCGCCTGATCCGGGACATCCCCTGCCGCACAGTCACACCTGATGCCAGCGTGTACAGTGACATTGTGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGTCTGCCCTTGCCTGAGTTTGTAGACAACACTCAGGTGCCCACCTACTGCCTGAACACACGGGGTGAAGGGGCTGTGCGCAAGATCCTCCTGTGTATTGCCAACCAGTTCCCTGACATCTCCTTCTGCCCTGCCCTGCCTGCTGTGGTGGCCTTGCTACTGCACTACAGCATCGATGAAGCTGAGTGTTTCGAAAAAGCCTGCCGCATCTTATCCTGCAATGACCCCACCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTTGAGTCTTCCTGTATGACATTTGGGGACCTGGTGAACAAGTACTGCCAGGCAGCCCATAAACTGATGGTGGCCGTGTCAGAGGACGTCCTGCAGGTCTACTCTGACTGGCAGCGATGGCTCTTTGGGGAGCTGCCCCTCAATTACTTTGCCCGTGTTTTTGATGTCTTCCTTGTAGAAGGCTACAAAGTATTGTACCGAGTTGCTCTGGCCATCCTCAAGTTCTTCCACAAGGTGAGAGCAGGACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCCGAATGTTTGTCAAGGACATTGCCAAGACAGTGTCCCCTGAGAAACTACTAGAGAAGGCCTTTGCCATCCGCCTATTTTCCCGAAAGGAGATCCAGCTCTTGCAAATGGCCAATGAGAAAGCACTGAGGCAGAAGGGTATAACTGTCAAACAGAAGAG
Seq A exon
GTAGGTGGGCCCCAGGGTCATGTGCATGTGTGCCCGTGCTTCTCTGTGTGTGTGTTTGTGTGTATGCTTGTATACATGTGTGTGTGTGTGCACCTGTACTGTGTGTGTGTGTGTGTGTGTGTATGCGTGTGTGTGTGTGTGTGTATGCTTGTATGCATGTGTGTGTATGCTCCTGTGTGTGCACCTGTACTGTGTATATGTGTGTGTATGTGTGTGTGTGTGTATGCTTGTATGCATGCATGTGTGTGTGCTCCTATACTCTGTGTGTGTGTGTGTGTGTGTGTGTACCTGTACTGTGAGCATATTGCATCTGTGGAGTGGGAAGCTTTAGTGGTACGCATCCTTGAGGTCTGAGCATGAGTCTGCTTCTTGCCTTCTGTCTGTCCACCTGTCCACATGTGAATACAAAGACATTAGAAAGCAGGAAGGGCTTTGCAGTTATGGCCTTAACAAGACAAGGAAGCTGGGTATTACCAGGGGGTCAGAAGGTCCAGCAGTTTCCAGGCTGCCCTCCTAGAGGTCACATCAGAACTGCCCCTGCTCTGCCCTTCTAGCTCCAAGCTTCATGGCTGGCATTCTTCTGAATGCTGACTGTGGCCTCCCGTCCCTGGAAGCAGGGTTGGGAAGAGTCATGGTATTTGACATGATACTAGGTTACTGACACATGGCTGGCTGCTGGTATGGAGGTCACTTTCTCCTGGACCCGAAGGAAGGCATATCTGGGGACCGGTACCCACCACTAACCTCACCTTGTCTGTTTTATTTTTCTTCCTCTCCGTGTCCGTTGCTTCCTCCTGTTTCTCAG
Seq C2 exon
TGTCTCACTTTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-Tbc1d24:NM_001163849:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=64.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: