BtaINT0001044 @ bosTau6
Intron Retention
Description
Bos taurus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001046296]
Coordinates
chr25:1998752-2000389:+
Coord C1 exon
chr25:1998752-1999822
Coord A exon
chr25:1999823-2000371
Coord C2 exon
chr25:2000372-2000389
Length
549 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TGCTTCCTCCTGTTTTTCAGTGT
3' ss Score
9.38
Exon sequences
Seq C1 exon
GGCATGGGATGGCAGACAGGTTAGCCAAGAAGCCTCGGAGAGGGTGCCGGTGGATGTAGCTGCCCTTTGACCCCTCCTGCCCCCGACCCCGGGCACTCCCTGCACGATGCACCCCCCAGCCTACAACTGCTTTGTGGACAGAGACAAGATGGACTCGGCCATCCCGGACCTGGGGCCCAAGGAGCTGAGCTGCACAGAGCTGCAGGAGCTGAAGCAGCTGGCACGCCAGGGCTACTGGGCCCGTAGCTACGCCCTGCGGGGGCAGGTGTACCAACGCCTGATTCGGGACATCCCCTGCCGCACAGTCACCCCCGATGCCAGCGTGTACAGAGACATCGTTGGCAAGATCGTGGGCAAGCACAGTAGCGCCAGCCTGCCCCTGCCCGAGTTTGTGGACAACACGCAGGTGCCCAGCTACTGCCTGAACTCAAAGGGCGAGGGCGCTGTGCGCAAGATCCTGCTGTGCATCAGCAACCAGTTCCCCGACGTGTCCTTCTGCCCCGCACTGCCCGCCGTCGTGGCCCTGCTGTTGCACTACAGCGCCGATGAGGCTGAGTGCTTTGAGAAGGCCTGCCGCATCCTGGCCTGCAACGACTCCAGCAGGAAGCTGGTAGACCAGAGCTTCCTGGCCTTCGAGTCCTCCTGCATGACGTTCGGGGACCTGGTGAACAAGTACTGCCAGGCGGCCCACAAGCTGATGGTGGCCGTGTCGGAGGACGTCCTGCAGGTGTACGCAGACTGGCAGCGCTGGCTCTTCGGGGAGCTGCCCCTCAGCTACTTCGCCCGTGTCTTTGACGTCTTCCTGGTGGAGGGTTACAAGGTGCTGTACCGCGTGGCACTGGCCATCCTCAAGTTCTTCCACAAGGTGAGGGCGGGGCAGCCGCTCGAGTCGGACAACGTGAAGCAGGACATCCGCGCCTTCGTCAGGGACATCGCCAAGACCGTATCTCCCGAGAAACTGCTGGAGAAGGCGTTTGCCATCCGCCTCTTCTCTCGGAAGGAGATTCAGCTCCTGCAGATGGCCAACGAAAAAGCTCTGAAGCAGAAGGGCATCACCGTCAAGCAGAAGAG
Seq A exon
GTAGGCAGGCCACTGGGGCCACGTCTGGGGCCCAGATGGGGTGGGGCCTGTGAGGAAGCACCCTGGGGGCTTGGGGCCTGAGCTCGTCCGGCTGGCTGGCCAGTAAGCCCTCCGTGCGCATGCAGGAAAACACCGGCCAGGGGACAGGGCCTGTCTGGTGTAGCTGCGGGTGGCCAGGGCAGCTATGGGCGCGGGGCCTGTGGCCGAGATGGAGGCTGGAGCTGACGGTGGTGCCCGTGGGCCCAGGAGGGAGCCAGGCTGGCCTCGCTGGGTCACTCTGGGGCTGCTCTTGCTGCCCGGCCCTCAGCTCCGGGCTCCCGTGCTGGTGGCCCCATCCCGAGCACGGCCACCTGGGGAGCCAGCCTGGGGAGGGCCTGTGTGTTCTGAGACATCAGCGGCCGCTGCTGTGCCCCAGGTGTAGATGTGGAAGCCTTTCTTGTGGGCCAAAGGCAGGCGTGTCCTGGGTGTTAGTACTTGCCACTAACCTCTCCTTGTCTGTTTTATTTTTCTGCCTCTTCTCCATGTCCATTGCTTCCTCCTGTTTTTCAG
Seq C2 exon
TGTTTCACTTTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005458:ENSBTAT00000007182:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=64.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]