MmuALTD1023056-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24175432-24181395:-
Coord C1 exon
chr17:24181225-24181395
Coord A exon
chr17:24181164-24181224
Coord C2 exon
chr17:24175432-24180676
Length
61 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TTGTCTTTGTGTTTCTGCAGAGC
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGGGAGGAGGTGGTCAAGCACTCTACGTTGATGGGGACCTGAATCGAGGGCGCACTGGACACTGTGACACATTCAACAACCAGCCCCTCTGCTCTGAGAACTTCCTCATCGCAGCTGTGGAGGCTTGGGGCTTCCAAGACCCTGACACCGAATGACGGGCCCGCACTGATG
Seq A exon
GTGACAGCCACATTGTGGGGTGATGGGACAGAGGCCCGGCTGCCTCTTCAGGGAGCAGGGA
Seq C2 exon
AGCCTGAAGCTCTTGCTGCGCCTCGCTGCGAGTCCACACCTGAAGGTGGCCTCCGGAGAGACTTTCTTTGACCACCTTGGCCAGTCAGCTCCATTTCCAGAGTTCTTCTCAGAGCTGACTAGACTCTGAGGCCTTTGCCTCTCATCCCTGTGGCCTCCTTGAAGTTCTGTAGTCTTGGTGACTCTTGTACTTGGTTCCTCTGTCACAGTGACTGAGGCCCACCAAGCATGGCATGCTTGTCCCCATCCAGCTTTTTGCCTTCTCCCCAGGCCCTGTGCTCCCCTGGACCCGTTCACACAGCATCTGATTCACCTGTGTGACCTGATCCCTCAGCTGGCACTGTGGCCGACCACGTACTGTATCTTCTGTGTGCTACCCCTGCCCCTATTAAGGCCTTCAGGTCTCTGGATGTCTGTGCTTCCTGAGCCCTGTGCCAGCCTGTGCACATAGGATGCCAGCCTGTGCACATAGGATGCCAGCCTGTGCACATAGGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-33-40,34-40,35-40-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0753411=TLD=PD(23.8=86.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGACCCTGACACCGAATG
R:
AAATGGAGCTGACTGGCCAAG
Band lengths:
134-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types