RnoALTD0030204-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000052204 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:RGD Symbol;Acc:1306143]
Coordinates
chr10:13551100-13553800:-
Coord C1 exon
chr10:13553626-13553800
Coord A exon
chr10:13553563-13553625
Coord C2 exon
chr10:13551100-13553053
Length
63 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TTGTCTTTGTGTTTCTGCAGAGC
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGGGAGGAGGTGGCCAAGCACTCTACATCGATGGGGATCTGAACCGAGGGCGCACCGGACACTGTGACACGTTCAACAACCAGCCCCTGTGCTCGGAGAGCTTCCTCATCGCGGCCGTGGAGGCTTGGGGCTTCCAAGACCCCGACACCCAGTGACTGACGGGCCCGCGCTGATG
Seq A exon
GTGACTGAGCCACGTTGTGGGGTGATGGGGCGGAGGCCCAGCTGCCTCTTCAGGGAGCAGGGA
Seq C2 exon
AGCCTGAAGCTCTTGCTGCACCTCACTGCGAGTCCACACCTGAAGGTGGCCTCCGGAGAGACTTTCTTTGACCAGCTTGACCAGTCAGCTCCATTTCCAGAGTTCTTCTCAGAACTGACTAGACTCAGTGAGGCCTTTGCCTCTTGTCCTTGTGGCCTCTTTGAAGTTCTGTAGTCTTAGTGACTCTTGTGCTTCCTTCCCTGTCATGATAGTGACTGAGGCCCACACAGCATGGCATGCTTGTCCCTGTCCAGCTTCCCGCCTTCTCCCCAGACCCTGCGCTTCTCTGGAACTACTCACACAGCATCTGATACACCCTTGTGCCCCCGTCCCTCAGCTCTCGCTATGGCTGACCACGTACCATATCTTCTGTGTGCTATCCCTGCTCCCATTATGACCTCTAGGTCTCTGGATGTCTGTGCTCCCTGAGCCCTGTACCAGCCTGGTACACAGTAGATGCCAAGAGAGGTGCTGCCTCGAGGTATAGCAAGCTCCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052204-7-11,8-11,9-11-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0753411=TLD=PD(23.7=86.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACACTGTGACACGTTCAA
R:
CAGTGAGGTGCAGCAAGAGC
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]