RnoALTD0030204-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000052204 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:RGD Symbol;Acc:1306143]
Coordinates
chr10:13551100-13553800:-
Coord C1 exon
chr10:13553626-13553800
Coord A exon
NA
Coord C2 exon
chr10:13551100-13553053
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGACT
5' ss Score
3.33
3' ss Seq
TTGTCTTTGTGTTTCTGCAGAGC
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGGGAGGAGGTGGCCAAGCACTCTACATCGATGGGGATCTGAACCGAGGGCGCACCGGACACTGTGACACGTTCAACAACCAGCCCCTGTGCTCGGAGAGCTTCCTCATCGCGGCCGTGGAGGCTTGGGGCTTCCAAGACCCCGACACCCAGTGACTGACGGGCCCGCGCTGATG
Seq A exon
NA
Seq C2 exon
AGCCTGAAGCTCTTGCTGCACCTCACTGCGAGTCCACACCTGAAGGTGGCCTCCGGAGAGACTTTCTTTGACCAGCTTGACCAGTCAGCTCCATTTCCAGAGTTCTTCTCAGAACTGACTAGACTCAGTGAGGCCTTTGCCTCTTGTCCTTGTGGCCTCTTTGAAGTTCTGTAGTCTTAGTGACTCTTGTGCTTCCTTCCCTGTCATGATAGTGACTGAGGCCCACACAGCATGGCATGCTTGTCCCTGTCCAGCTTCCCGCCTTCTCCCCAGACCCTGCGCTTCTCTGGAACTACTCACACAGCATCTGATACACCCTTGTGCCCCCGTCCCTCAGCTCTCGCTATGGCTGACCACGTACCATATCTTCTGTGTGCTATCCCTGCTCCCATTATGACCTCTAGGTCTCTGGATGTCTGTGCTCCCTGAGCCCTGTACCAGCCTGGTACACAGTAGATGCCAAGAGAGGTGCTGCCTCGAGGTATAGCAAGCTCCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052204-7-11,8-11,9-11-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0753411=TLD=PD(23.7=86.5)
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACACTGTGACACGTTCAA
R:
CAGTGAGGTGCAGCAAGAGC
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]