MmuALTD1023304-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:25084726-25085716:+
Coord C1 exon
chr2:25084726-25084856
Coord A exon
chr2:25084857-25084860
Coord C2 exon
chr2:25084961-25085716
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
AAGAGCCATGTGTCTCACAGGCA
3' ss Score
5.06
Exon sequences
Seq C1 exon
GTGGAAGTCAGCTATCCTGGGCAGGAGCGCTGGTTACGGGACTACTGTGCCTCGGGTCTGTACATCCTCGTATTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAA
Seq A exon
GCAG
Seq C2 exon
GCAGGTGACACAGACATTGGCTGGACACTGGGCTTCATGCTGAACCTGACAGGCATGATTCCAGCTGAGGCACCGACCCACTGGCGGGCTCAGAGCTACAGCATCTGGACGGCTGGAGTAGTATTCGCAGTGCTGACCCTTGTGGCCATTCTTGGGGCAGCTGCCATCCAGATCTTCTGGACCCAGGACTAGGTAGAAACCAAGCTGAAGTAGATCACAGTCAACAATATCTAAAGCAGAAGTGTTGAGTCAACAGTGACAACACAGCTGTTTGTGTTGTCAACCTTGTGATCCACCATCAACTGTTCTTAGGAAAGAAGGCCTTTGGCACACAGGACCTTCTGAGCAGATCCTAGATGCCTGCCCTTATGAACCCCTGACCTTTAAGGACTCCAGTCCATCAATTGGGCCAGGAGGGCCAATTGCTGATAGTACTGACTCCTTTATGCCCTCAGGATAGCACTGGCTATGGGGACTGATGTTGTCCATAGGATAGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-15-27,16-27,17-27-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PD(1.6=11.1),PF0115012=GDA1_CD39=FE(57.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(36.4=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTGCTGCTGGAGGGCTAC
R:
CCAGTGTCCAGCCAATGTCTG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types