RnoALTD0010405-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2298821-2302782:+
Coord C1 exon
chr3:2298821-2298951
Coord A exon
chr3:2298952-2298955
Coord C2 exon
chr3:2299054-2302782
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
GAAGAGCCATTGTCTCACAGGCA
3' ss Score
2.97
Exon sequences
Seq C1 exon
GTGGAAGACAGCTACCCTGGGCAGGAGCGCTGGCTACGGGACTACTGTGCCTCAGGCCTATACATCCTCGTGTTGCTGCTGGAGGGCTACAAATTCAGTGAGGAGACCTGGCCCAACATCCAGTTCCAGAA
Seq A exon
GCAG
Seq C2 exon
GCAGGCGGCACGGACATTGGCTGGACACTGGGCTTCATGCTGAACCTGACAGGCATGATCCCAGCTGAGGCGCTGACCCAGTGGCGGGCTCAGAGCTACAGCATCTGGATAGCTGGAGTAGTGTTTGCAGTGCTGACCCTCGTGGCCATTCTTGGGGCAGCTGCAGTCCAGCTCTTCTGGACCCAGGACTAGGTAGAAACAAAGCTGATGGCGATGTCTAAAGCAGAAAAAGTCGATGGTGACAACACGGCTGTTTGTGTTGTCACCACAGGACCTTCTGAGCACATCCTAGACGCCTGCCCTCATGAGCCCCTGACACTTGAGGGCTCCAGTCTGCTGAGCAGGCCAGGAGAGCCACTTGCTGACAGTGCTGACTCCTCTGTGCCCTCAGGGCGGCACTGTCCATGGGGACTGTTAGTTGCCCCAGGGATAGAAACAAGAGAGGCAGCTGTGGGAATAGGGCTACCTCAGAAGGCTGTGTCCAGCCCAGCAGAGACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239-11-16,12-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(7.0=46.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGTGAGGAGACCTGGCC
R:
ATGCCTGTCAGGTTCAGCATG
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]