MmuALTD1024245-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124747603-124748567:+
Coord C1 exon
chr5:124747603-124747773
Coord A exon
NA
Coord C2 exon
chr5:124748391-124748567
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
GCGCCTGCTTTGCTTTCCAGATC
3' ss Score
9.65
Exon sequences
Seq C1 exon
GTTATTGAGAAAGAAGCCAAAAATTTCATTGATGAATCTTTCAAAACACTTCGCTCAGCGGAAGCGGCCTTCGACATGCTGCTAAAATTCAAGCATATCCGCTCCCGGGAAGCCATCAACCGTCAGATGATGATGAAGTTTAATGACATCCTGGCACAGTACTACAAGGAG
Seq A exon
NA
Seq C2 exon
ATCGATATCGTTAATAAGATCTTTGTGCAGAACCAGGACAACCCGCCGCTATACAAGAACCACCCTCCCGTGGCGGGCGCGATATGCTGGGAGCGATCCCTGTTCTACAGGATCAAGCACACCATCCTGCGCTTCATGGAGGTGGAGGAACTCCTGGACAGCGAGAGGGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-13-14,14-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.7=100)
A:
NA
C2:
PF083857=DHC_N1=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTCGACATGCTGCTAAA
R:
GGGTGGTTCTTGTATAGCGGC
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types