MmuALTD1024245-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124747603-124748567:+
Coord C1 exon
chr5:124747603-124747773
Coord A exon
chr5:124747774-124747853
Coord C2 exon
chr5:124748391-124748567
Length
80 bp
Sequences
Splice sites
5' ss Seq
AATGTAATG
5' ss Score
-0.31
3' ss Seq
GCGCCTGCTTTGCTTTCCAGATC
3' ss Score
9.65
Exon sequences
Seq C1 exon
GTTATTGAGAAAGAAGCCAAAAATTTCATTGATGAATCTTTCAAAACACTTCGCTCAGCGGAAGCGGCCTTCGACATGCTGCTAAAATTCAAGCATATCCGCTCCCGGGAAGCCATCAACCGTCAGATGATGATGAAGTTTAATGACATCCTGGCACAGTACTACAAGGAG
Seq A exon
GTGACCGGCCGGGGAACCCATGGCTACCCTGGCAGTGATCGCGTGGCCACAGCCCAGCCCAGAGACATTCCCTCTAAAAT
Seq C2 exon
ATCGATATCGTTAATAAGATCTTTGTGCAGAACCAGGACAACCCGCCGCTATACAAGAACCACCCTCCCGTGGCGGGCGCGATATGCTGGGAGCGATCCCTGTTCTACAGGATCAAGCACACCATCCTGCGCTTCATGGAGGTGGAGGAACTCCTGGACAGCGAGAGGGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-13-14,14-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.7=100)
A:
NA
C2:
PF083857=DHC_N1=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTCGACATGCTGCTAAA
R:
GGGTGGTTCTTGTATAGCGGC
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types