MmuALTD1025024-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000038797 | Zscan2
Description
zinc finger and SCAN domain containing 2 [Source:MGI Symbol;Acc:MGI:99176]
Coordinates
chr7:80860977-80863671:+
Coord C1 exon
chr7:80860977-80861077
Coord A exon
chr7:80861078-80861334
Coord C2 exon
chr7:80863165-80863671
Length
257 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TTCTCTGCCTTGTTTCTCAGCAG
3' ss Score
7.55
Exon sequences
Seq C1 exon
GAGGGGCCGGGCCGGGCCGGGCCAGACCGTGGGGTGCTTTTGCGCTCAGAGAGATAGCGGGAACAGGACCTGGTCCCTGGAGAGGCGAGCGGGAGAGGCAG
Seq A exon
GTCAGGAGCCGCGCGCCCCGCGGGGAACAGCCAGAGAGACAGCGAGTAACGGGCCTGGAGCCAGCTCAGGGCAGTTTGGGGGAGGGGCGTCGGTGTCCGCGCCCGACGGGCTGGACGCGCAGCTCTGCGTCCTGGTTCTTCGGAGCCCTCGAGGCTCCGCTCACACCAGAGCGCTGGGTACGCGCAGCCTAGGAACGCAGGCTTTACACTGGGAAGGGATGCTCGACGACATCCCACCGAGCCGCCTCCTTGACCAG
Seq C2 exon
CAGTGTTTCTTGTTGAGATTGGAGGAAAGACGGCCTTCTCAGAGAGCCTGACTGGAGACAGGTGTTAGGCTTGAAGCCTTCGTGACCATCCAGGAAGTTGGACAATGGCAGCCGAAGTGCCAGCAGTGAGCACTCCCCTCAGCCCTTTGGTTCAGGTACCTCAAGAAGAAGATGAACAGGCAGAGGTCACCACTATGATCCTGGAGGATGACGCGTGGGTGCAGGAAGCAGTGCTGCAGGAGGATGGCCCTGAGTCTGAGCCCTTTCCCCAGAGTGCTGGAAAAGGCAGCCCCCAGGAGGAGGACGCAGCCGAGGGACCCCAGGGTGCTCTTGTCCGATTTCGGGAGCTCTGTCGGCGCTGGCTGAGGCCAGAGGTGCACACTAAGGAGCAGATGCTAACTGTGCTGCCAAGAGAAATTCAGGCCTGGCTGCAAGAACATCGGCCTGAGAGCAGTGAGGAGGCAGTGGCCCTGGTGGAAGACCTGACCCAGACTTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038797-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.749
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(95.6=63.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATAGCGGGAACAGGACCT
R:
GACTCAGGGCCATCCTCCTG
Band lengths:
307-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types