MmuALTA0020912-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038797 | Zscan2
Description
zinc finger and SCAN domain containing 2 [Source:MGI Symbol;Acc:MGI:99176]
Coordinates
chr7:80860920-80863475:+
Coord C1 exon
chr7:80860920-80861077
Coord A exon
chr7:80863165-80863167
Coord C2 exon
chr7:80863168-80863475
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TTCTCTGCCTTGTTTCTCAGCAG
3' ss Score
7.55
Exon sequences
Seq C1 exon
GGGCCTCTCCCGTCCATTGTTCTCTGTGCCCCTTGGGCTTGAGCTGAGGTGAATCCAGAGGGGCCGGGCCGGGCCGGGCCAGACCGTGGGGTGCTTTTGCGCTCAGAGAGATAGCGGGAACAGGACCTGGTCCCTGGAGAGGCGAGCGGGAGAGGCAG
Seq A exon
CAG
Seq C2 exon
TGTTTCTTGTTGAGATTGGAGGAAAGACGGCCTTCTCAGAGAGCCTGACTGGAGACAGGTGTTAGGCTTGAAGCCTTCGTGACCATCCAGGAAGTTGGACAATGGCAGCCGAAGTGCCAGCAGTGAGCACTCCCCTCAGCCCTTTGGTTCAGGTACCTCAAGAAGAAGATGAACAGGCAGAGGTCACCACTATGATCCTGGAGGATGACGCGTGGGTGCAGGAAGCAGTGCTGCAGGAGGATGGCCCTGAGTCTGAGCCCTTTCCCCAGAGTGCTGGAAAAGGCAGCCCCCAGGAGGAGGACGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038797-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.753
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(95.6=63.7)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATAGCGGGAACAGGACCT
R:
TGTCTCCAGTCAGGCTCTCTG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types