RnoALTA0046081-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022164 | Zscan2
Description
zinc finger and SCAN domain containing 2 [Source:RGD Symbol;Acc:1584548]
Coordinates
chr1:142679345-142682602:+
Coord C1 exon
chr1:142679345-142679942
Coord A exon
chr1:142682098-142682100
Coord C2 exon
chr1:142682101-142682602
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
CTGCCTCGTTTCTTTCTCAGCAG
3' ss Score
7.8
Exon sequences
Seq C1 exon
AAAGGACTGATAAATTCACTCAGCTTTCATTTTTTATAGATAAATACACGCACGCTTTAGAGAAGTGAAACTATCTGTTTCATGTAAAAAGCTTAGGGCAGTACTAGAAGACAGATGGCTAGTCCTGGGACTTCCTCTGCCTCTCATCCTGAGGCATTGCCTAAGGCTATCAAACCTCCGGTTCGCTCAGGTACAGAAGTCTGTTCGTTTCTGGTAAACTACATTTCACACAATGCATCGGGCCGACCTTACCTCCCACAGCCCAGCTTGACGCTGTTTTCACCAATAGTAGAGTAGAATTTGAGGAACTGTCGTGGATAGCCAATGAGAGTGGCTGTGGGCGGGCCTCTCCTGTCCATTGTTCTCTGTGCCCCTTGGGCTTGAGCTGAGGTGAATCCAGAGGGGCCGGACCGGGTCGGGCCAGACCGAGGGGTGCTTTTGCGCGCAGAGAGATAGCGGGAACAGGACCTGGTCCCTGGAGAGGCGAGCGGGAGAGGCAG
Seq A exon
CAG
Seq C2 exon
TGTTTCTTGTTAAGATTGGAGGAAAGACAGCCTTCTCAGAGAGCCTGGCTGGAGACAGGTGTGAGACTTGAAGCCTCTGTGATCATCCAGGAAGCTGCAATGGCAGCTGAAGTGCCAGCAGTGAGCACTCCCCTCAGCCCTTTGGCTCAGGTGCCTCAAGAAGAAGATGAACAGGCAGAGGTTACCACTATGATCCTGGAGGATGATTCGTGGGTACAGGAAGCAGTGCTGCAGGAGGATGGCCCCGAGTCTGAGCCCTTTCCCCAGAGTACTGGAAAAGGCAGCCCTCAAGAGGAGGGTACAGCTGAGGGACCTCGGGGTGCGCTTGTCCGATTTCGGGAGCTCTGTCGGCGCTGGCTGAGGCCAGAGGTGCACACTAAGGAACAGATGCTGACTGTGCTTCCAAGAGAGATTCAGGCCTGGCTGCAAGAACATCGTCCTGAGAGCAGCGAGGAGGCAGTGGCCCTGGTGGAAGACTTGACCCAGACTTTTCCGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022164-4-1,4-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.822
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(95.6=63.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATAGCGGGAACAGGACCT
R:
GGCTCTCTGAGAAGGCTGTCT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]