BtaALTA0034201-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001385 | ZSCAN2
Description
Bos taurus zinc finger and SCAN domain containing 2 (ZSCAN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001101190]
Coordinates
chr21:22702080-22704340:+
Coord C1 exon
chr21:22702080-22702199
Coord A exon
chr21:22703825-22703828
Coord C2 exon
chr21:22703829-22704340
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTTCTCTCTCTCATTCTTAGCCA
3' ss Score
7.57
Exon sequences
Seq C1 exon
GTCCATTGTTCTCGGTGCCCCTCGGGCTTGAGCCGCTGCGACTCCGGAGGGGCCGGACCGTGCCCGCGGGCGCTTTAGCGCGTGGAGCGACCGAGGAAGTGGCATCCGGTCTCTGGAGAG
Seq A exon
CCAG
Seq C2 exon
ACCACTTGTTGAAACTGGAGAAGGGTGCCGTCTTCTCAGGGAGCCTGCCTGGAGAAGACTGAAGGTCAAGATCAGAAGCCTGAGTGATTCCAACCCAAGGACGTGGATGATGGCCTCAGAAGGGCCAAGAGTAACTGCTCCTCGAAGCCCTGTAGTCTGCCTCCCTCAGAAGGAGGACAACCAGGAGGAGGAGGTGGCCACCGTGATCCTGGAGGACGACTCCTGGGTACAGGAAGCTGTGCTGCAGGAAGATGGCCCTGAGACCGAGCCCTTTCCCCAGGGTGCTGGCAAGGGCAGCCCCCATGAGGACGTGGCCGGAGGGCCGCAGGGGGCACTCGGCCGCCTTCGAGAGCTCTGCCGGCGCTGGCTGAGGCCAGAGATGCACACCAAGGAGCAAATGCTGACCGTGCTGCCCCGGGAAATTCAGGCCTGGCTGCAGGAGCATCGGCCTGAGAGTGGCGAGGAGGCGGTGGCCCTGGTGGAGGACTTGACCCAGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001385-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.746
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(95.5=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGTGGCATCCGGTCTC
R:
ACCTTCAGTCTTCTCCAGGCA
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development