MmuALTD1025830-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:121988912-121990357:+
Coord C1 exon
chr3:121988912-121988984
Coord A exon
chr3:121988985-121989269
Coord C2 exon
chr3:121990309-121990357
Length
285 bp
Sequences
Splice sites
5' ss Seq
TTTGCTGAG
5' ss Score
-37.32
3' ss Seq
GTTTTCTTCTATGTGTTAAGTCT
3' ss Score
4.61
Exon sequences
Seq C1 exon
CCTCACAAACTTCCTTATGGGAGACGTAGGCAGTGACTCGATACTACGTCTACCTATTTCTCGAGAAAGTAAG
Seq A exon
GTAGGTCAAAAAAAAATTTTTTAAACTTGCTATCACAAACCGTTTCCTGATGTTGATCTTAGTATTATTCTGATTACAGATTACCTCATCTTTTGAGGCCAAACAAAGCAGATTAGTTAATTTTATATATGATAAAACAATCAGTTTCTGGAGCAATAATTTGGTTATACTTTTCTAAGTGATACTGTATTAAGAAAATAGCCTAATTCTTCATGAGTCTATGTTATGTGGTCCAGAACTTTAGTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq C2 exon
TCTTTTGAAAACATTTCTGTGGACTCAGTGGACTTACCCCATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-17-17,18-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types