MmuEX6073782 @ mm10
Exon Skipping
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:121989169-121991122:+
Coord C1 exon
chr3:121989169-121989269
Coord A exon
chr3:121990309-121990357
Coord C2 exon
chr3:121990985-121991122
Length
49 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTCTATGTGTTAAGTCT
3' ss Score
4.61
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGTATTAAGAAAATAGCCTAATTCTTCATGAGTCTATGTTATGTGGTCCAGAACTTTAGTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
TCTTTTGAAAACATTTCTGTGGACTCAGTGGACTTACCCCATGAAAAAG
Seq C2 exon
GAAATTTTTCTCCTATAGAACTAGACAACTTGCTGTTAAAGAACACTGACTCTATAGAGCTGGCTTTGTCCTATGCTAAAACATGGTCAAAATATACCAAGAATATAGTGTCGTGGGTTGAAAAAAAGCTCAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-'18-18,'18-17,19-18
Average complexity
C2
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTCCAGAACTTTAGTGAAG
R:
GCATAGGACAAAGCCAGCTCT
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types