GgaEX6044177 @ galGal3
Exon Skipping
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14326800-14331754:+
Coord C1 exon
chr8:14326800-14326872
Coord A exon
chr8:14331097-14331157
Coord C2 exon
chr8:14331629-14331754
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTCTTGTACACCAGTCT
3' ss Score
4.86
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TATTTCAGACTTCCTTATGGGAGATGTAGACAATGGCTCGTCGCTGGGACTTCCTGTATCTCGGAGAAGTCGG
Seq A exon
TCTTTTGAGAATCTCTCTGTGGAGTCTGGGGGTTCACTGCATGAAAGGGATGATATTCAAG
Seq C2 exon
CAGAGGAGGTTGACAACATGCTCCTAAGGAATGACAGTGGAATTGAATCGGCTCTGTCATATGCTAAAGCGTGGTCAAAATATACCAAGGATGTAGTCGCATGGGTAGAAAAAAAGCTTAGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-'9-12,'9-10,10-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGGGACTTCCTGTATCT
R:
CCCATGCGACTACATCCTTGG
Band lengths:
138-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]