DreEX0014323 @ danRer10
Exon Skipping
Gene
ENSDARG00000017748 | arhgap29b
Description
Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
Coordinates
chr2:15496733-15501499:+
Coord C1 exon
chr2:15496733-15496805
Coord A exon
chr2:15498199-15498253
Coord C2 exon
chr2:15501344-15501499
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTTATCTCTTCCAGTCT
3' ss Score
10.56
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGTGTCTGACTTCCTTATGGGAGATGTGGACGGTGGCTCCAGGTTGGGGTATCCCCAAGCCAGAAGAAGTCGT
Seq A exon
TCTTTTGAAAACCTCTCTGAAGATTCACGAGGCTGCAGTCAAAACGATCTGGCAG
Seq C2 exon
ACCATTCTCTGTCTCCAGAACTGTCCACAGTGGAGCAGGTGGACCTTCTTCTCCTGAAGAATGACAGCGGTGTAGAGTCGGCTCTGCTCTATGCCAAGGCCTGGTCCAAATACACCAAAGACGTTCTGGCCTGGGTGGAGAAACGCCTAAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017748-'8-6,'8-5,9-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.263 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGGAGATGTGGACGGTGG
R:
CGACTCTACACCGCTGTCATT
Band lengths:
138-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]