GgaEX6044177 @ galGal4
Exon Skipping
Gene
ENSGALG00000005683 | ARHGAP29
Description
rho GTPase-activating protein 29 [Source:RefSeq peptide;Acc:NP_001231811]
Coordinates
chr8:12577954-12581787:+
Coord C1 exon
chr8:12577954-12578026
Coord A exon
chr8:12581664-12581724
Coord C2 exon
chr8:12581758-12581787
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTCTTGTACACCAGTCT
3' ss Score
4.86
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TATTTCAGACTTCCTTATGGGAGATGTAGACAATGGCTCGTCGCTGGGACTTCCTGTATCTCGGAGAAGTCGG
Seq A exon
TCTTTTGAGAATCTCTCTGTGGAGTCTGGGGGTTCACTGCATGAAAGGGATGATATTCAAG
Seq C2 exon
ATACAGGATTGTGTTTATCTTTGTCTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-'12-13,'12-12,14-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAGACTTCCTTATGGGAGATGT
R:
AGAGACAAAGATAAACACAATCCTGT
Band lengths:
100-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]