HsaEX0005489 @ hg19
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:30207]
Coordinates
chr1:94670617-94674460:-
Coord C1 exon
chr1:94674388-94674460
Coord A exon
chr1:94671191-94671239
Coord C2 exon
chr1:94670617-94670754
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTCCATGTTGTAAGTCG
3' ss Score
1.66
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCTTACAAACTTCCTTATGGGAGATGTAGGCAATGATTCATTATTGCGACTGCCTGTTTCTCGAGAAACTAAG
Seq A exon
TCGTTTGAAAATGTTTCTGTGGAATCAGTGGACTCATCCAGTGAAAAAG
Seq C2 exon
GAAATTTTTCCCCTTTAGAACTAGACAACGTGCTGTTAAAGAACACTGACTCTATCGAGCTGGCTTTGTCATATGCTAAAACTTGGTCAAAATATACTAAGAACATAGTTTCATGGGTTGAAAAAAAGCTTAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTTATGGGAGATGTAGGCA
R:
GCATATGACAAAGCCAGCTCG
Band lengths:
141-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)