RnoEX6011343 @ rn6
Exon Skipping
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225586611-225588907:+
Coord C1 exon
chr2:225586611-225586683
Coord A exon
chr2:225588022-225588070
Coord C2 exon
chr2:225588770-225588907
Length
49 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTCTATGTGTTCAGTCC
3' ss Score
7.58
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCTCACAAACTTCCTTATGGGAGATGTAGGCAATGATTCGATACTACGACTGCCTATTTCTCGAGAGAGTAAG
Seq A exon
TCCTTTGAAAACATTTCTATGGACTCAGTGGACTTACCTCATGAAAAAG
Seq C2 exon
GAAACTTTTCTCCTATAGAACTAGACAACTTGCTGTTAAAGAACTCTGACTCTATAGAACTGGCTTTGTCTTATGCTAAAACTTGGTCAAAATATACCAAGAACATAGTGTCCTGGGTTGAAAAAAAGCTCAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563-'16-17,'16-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTGCCTATTTCTCGAGAGA
R:
ACCCAGGACACTATGTTCTTGGT
Band lengths:
146-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]