BtaEX6016482 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49436323-49439124:+
Coord C1 exon
chr3:49436323-49436395
Coord A exon
chr3:49438504-49438552
Coord C2 exon
chr3:49438987-49439124
Length
49 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTCCTTTTTTAAAGTCT
3' ss Score
6.57
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTGACAAACTTCCTTATGGGAGATGTAGGCAATGATTCATTATTGCGACTGCCTGTTTCTCAGGAAAGTAAG
Seq A exon
TCTTTTGAAAGCGTTTCTGTGGAATCAGTGGACTCATCCAATGAAAAAG
Seq C2 exon
GAAGTTTTTCTCCTATAGAATTAGACAGCATGCTGTTAAAAAACACTAATTCTGTAGAACTGGCTTTGTCATATGCTAAAACATGGTCAAAATATACCAAGAACATAGTCTCATGGGTTGAAAAGAAGCTGAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190-'10-10,'10-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGACTGCCTGTTTCTCAG
R:
ACCCATGAGACTATGTTCTTGGT
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]