MmuALTD1025831-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:122005658-122006915:+
Coord C1 exon
chr3:122005658-122005753
Coord A exon
NA
Coord C2 exon
chr3:122006776-122006915
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTG
5' ss Score
4.41
3' ss Seq
TGTACTGTTTCTGTTACAAGGAC
3' ss Score
6.9
Exon sequences
Seq C1 exon
ACTTTCATCGGAAACTTCCACGGACTCCATCCAGTGGAACCATGTCTTCTGCTGATGATCTCGATGAGAGAGAGCCACCGTCCCCTTCAGAAGCTG
Seq A exon
NA
Seq C2 exon
GACCCAATTCCCTCGGAGCATTTAAGAAAACTTTGATGTCAAAGGCAGCTCTCACTCACAAGTTTCGCAAGTTGAGATCCCCGACAAAGTGCAGGGATTGTGACGGCATCGTAATGTTCCCAGGCGTCGAGTGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-39-38,40-38-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(56.2=57.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGAGAGAGCCACCGTCC
R:
CGGGGATCTCAACTTGCGAAA
Band lengths:
117-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types