GgaALTD1003444-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000005683 | ARHGAP29
Description
rho GTPase-activating protein 29 [Source:RefSeq peptide;Acc:NP_001231811]
Coordinates
chr8:12587674-12588692:+
Coord C1 exon
chr8:12587674-12587769
Coord A exon
chr8:12587770-12587772
Coord C2 exon
chr8:12588529-12588692
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATG
5' ss Score
4.46
3' ss Seq
AAAAATTTAAACCTCTCCAGGTT
3' ss Score
5.83
Exon sequences
Seq C1 exon
GGGATTTTAAAAGACGACTTCCACGAACACCTTCTACTGGTACTATGTCATCTGCAGATGATCTTGATGAAAGAGAACCACCATCTCCTTCAGACT
Seq A exon
GTG
Seq C2 exon
GTTTAAATGATCTGACATCTGAAACTGCAAATTCTCCGGGACCTTTTAGAAACACTAATATGTCTAAAGCAGCACAAACACATAAACTACGGAAGCTGAGAGCTCCATCTAAATGCAGAGAATGTGACAGCTTAGTGGTATTTCATGGAGCTGAATGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-26-27,27-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(57.1=50.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTACTATGTCATCTGCAGA
R:
GGTCCCGGAGAATTTGCAGTT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]