GgaALTD1003444-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000005683 | ARHGAP29
Description
rho GTPase-activating protein 29 [Source:RefSeq peptide;Acc:NP_001231811]
Coordinates
chr8:12587674-12588692:+
Coord C1 exon
chr8:12587674-12587769
Coord A exon
NA
Coord C2 exon
chr8:12588529-12588692
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTGGTA
5' ss Score
-17.05
3' ss Seq
AAAAATTTAAACCTCTCCAGGTT
3' ss Score
5.83
Exon sequences
Seq C1 exon
GGGATTTTAAAAGACGACTTCCACGAACACCTTCTACTGGTACTATGTCATCTGCAGATGATCTTGATGAAAGAGAACCACCATCTCCTTCAGACT
Seq A exon
NA
Seq C2 exon
GTTTAAATGATCTGACATCTGAAACTGCAAATTCTCCGGGACCTTTTAGAAACACTAATATGTCTAAAGCAGCACAAACACATAAACTACGGAAGCTGAGAGCTCCATCTAAATGCAGAGAATGTGACAGCTTAGTGGTATTTCATGGAGCTGAATGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683-26-27,27-27-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(57.1=50.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTACTATGTCATCTGCAGA
R:
GGTCCCGGAGAATTTGCAGTT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]