GgaINT0037545 @ galGal4
Intron Retention
Gene
ENSGALG00000005683 | ARHGAP29
Description
rho GTPase-activating protein 29 [Source:RefSeq peptide;Acc:NP_001231811]
Coordinates
chr8:12587674-12588692:+
Coord C1 exon
chr8:12587674-12587772
Coord A exon
chr8:12587773-12588528
Coord C2 exon
chr8:12588529-12588692
Length
756 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATG
5' ss Score
4.46
3' ss Seq
AAAAATTTAAACCTCTCCAGGTT
3' ss Score
5.83
Exon sequences
Seq C1 exon
GGGATTTTAAAAGACGACTTCCACGAACACCTTCTACTGGTACTATGTCATCTGCAGATGATCTTGATGAAAGAGAACCACCATCTCCTTCAGACTGTG
Seq A exon
GTAATGTTGCTTCCATACCTGAATTTCCCAAAGGATGGCTGTTGTCATATAGTGTGACTCTTCTCTTTAATGAGCTTGAGAAAAATACACTAAATGTATTGTGATTACTAGCATATTTGTTAAATCAGTGTTTGAGCTTTTAAGAAGTTTTCTAGGCAGTTTACTATACGCATTAATTTTAATTTTTTTATCTGTAAAACAAAGGATTTTTTTTTTCCAGAGTTACTGGTAGCTTGGATCAGTCATGAAAAGCACCAGTTGGTATTGTGTTTTAGAACACTTTAAGTATTGTTCTAATGTTATCATAGAGGATTGAGATTGTGATGGTTTTTTGTGGTTCTGTATGGGTTCTTCTGTGAGTGTGTATTCTTTCTGTAATGTATAGTTATGAGGTACTTCCAAAACATTACAAGCCAAACTGTAATCACCTTTCATATTCCAATAAAGGATTTTGAAATAGATAGAATGAAACTTGCATGAGTAGTTGCCTAATCTGTGACAATACTCCGATTAAATATCCAAATATTTTCACATGCCAATGACAGAGAAGAAAACTGATATACTTAAAAATGAAAAACTGTTTAATCCTACTTTTATGTAAGGCAATACGATAATTAATCTGTTATGCAGTCTGTAATGATGTTTTGCTTCCTTGTGATTCTACGGCACAGTTCTTTAAAAAAAAAAAAAAAAAAAGATACCATATCTTGTTAATAGATATTACAATGACTGAAACAAAAATTTAAACCTCTCCAG
Seq C2 exon
GTTTAAATGATCTGACATCTGAAACTGCAAATTCTCCGGGACCTTTTAGAAACACTAATATGTCTAAAGCAGCACAAACACATAAACTACGGAAGCTGAGAGCTCCATCTAAATGCAGAGAATGTGACAGCTTAGTGGTATTTCATGGAGCTGAATGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683:ENSGALT00000009113:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(57.1=50.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTTTAAAAGACGACTTCCACG
R:
CTCCTCACATTCAGCTCCATGA
Band lengths:
263-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]