RnoINT0020072 @ rn6
Intron Retention
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225602425-225603688:+
Coord C1 exon
chr2:225602425-225602523
Coord A exon
chr2:225602524-225603548
Coord C2 exon
chr2:225603549-225603688
Length
1025 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTA
5' ss Score
2.14
3' ss Seq
TACGTTTTTTCCCTTACAAGGAC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GAGACTTTCATCGGAAACTTCCACGAACTCCATCCAGTGGAACCATGTCTTCTGCTGATGATCTAGATGAACGAGAGCCACCATCACCTTCAGAAGCTG
Seq A exon
GTATTATAGTCTTCTCAGTTAGGACCCACTAAACCAGTTGAAATAGTGGCAGTGCATAATGCTAAATCATTAGTTTGTTATATGTATCTTAAATATATCTGCTCGTTTATGTATATATATGGATTGATAATGAATTGTTGAGATGATAGAAATATGTCTACAAGAATAAGAAGTAAAGCTGCTGGATCTAAAATATATTGGTAGTGTGAACAGCAGGTCATGTATGGTGTTCTTTCATAAGTCCAATACAGTGACTTTCTGTTAAAAGTATGGCATTACATAAAAAATTCTGGAAAAGCTCATTGTTAATAGCACAGGGACTATGGGCAGAAAAGCACAGTGGTGAAACTGTGTTGCTGTGCACGAAGCCCTGGCTTCTAGCCCAAGTACTGCGAAACAACAATTACAATAATGAAGAAACTGCAGGAAGCCAAGGAAGAAAAGCAGATAAATGTACTTCTCAAGGACAAGGAAAGTTATGGATGTTTAAGACATAAAAATCATTTACCTTAATGACTTGAATTAAACCAATATAAACTTGTTTTTGTTTCTTTGGTATACTGTTCTTTTGGCAGAATTTCACAAATTAATAGGGTATCTGACTTCCATTATGATTAAAAATATAACTAGCTAGTGTTAATCTGTAGTTTTATGATGGTACTATCTTTAATGGACATATTGCTCACATGCTAGCTTCATGAAACCAGCTCTTTAAGTAGTGATTGGGTTTTCTTAGGCATGTAATGCCACCTGTAAACACACTGTTTTTCACAGAGCATAGTAATAAAGCACACATTTGTTTATCTTGCAGATACTGTGTCTTGGCATCTTGGTGATGACCATTATAGCATTTGAAGTGTGGAGATATATATATATATCTTATATATATATGTTGTTTTTGATGTTAGAAACCCCAGACAATAGTTTTTTGTAATATGTAGATGGCTGAAAAGTCTAAGGATTGCTTATAATATGTAAGAATGTTCTCATCTTTCCATTCTCGTGTACGTTTTTTCCCTTACAAG
Seq C2 exon
GACCCAATTCCCTCGGAACATTTAAGAAAACTTTGATGTCGAAGGCAGCTCTCACTCACAAGTTTCGCAAGTTGAGATCCCCCACAAAGTGCAGGGATTGTGAAGGCATCGTAATGTTCCCGGGCGTCGAGTGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563:ENSRNOT00000017076:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(56.2=57.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTTTCATCGGAAACTTCC
R:
CTCTTCACACTCGACGCCC
Band lengths:
239-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]