GgaINT0037545 @ galGal3
Intron Retention
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14337107-14338125:+
Coord C1 exon
chr8:14337107-14337205
Coord A exon
chr8:14337206-14337985
Coord C2 exon
chr8:14337986-14338125
Length
780 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATG
5' ss Score
4.46
3' ss Seq
AAATGATCTGACATCTGAAACTG
3' ss Score
-6.76
Exon sequences
Seq C1 exon
GGGATTTTAAAAGACGACTTCCACGAACACCTTCTACTGGTACTATGTCATCTGCAGATGATCTTGATGAAAGAGAACCACCATCTCCTTCAGACTGTG
Seq A exon
GTAATGTTGCTTCCATACCTGAATTTCCCAAAGGATGGCTGTTGTCATATAGTGTGACTCTTCTCTTTAATGAGCTTGAGAAAAATACACTAAATGTATTGTGATTACTAGCATATTTGTTAAATCAGTGTTTGAGCTTTTAAGAAGTTTTCTAGGCAGTTTACTATACGCATTAATTTTAATTTTTTTATCTGTAAAACAAAGGATTTTTTTTTTCCAGAGTTACTGGTAGCTTGGATCAGTCATGAAAAGCACCAGTTGGTATTGTGTTTTAGAACACTTTAAGTATTGTTCTAATGTTATCATAGAGGATTGAGATTGTGATGGTTTTTTGTGGTTCTGTATGGGTTCTTCTGTGAGTGTGTATTCTTTCTGTAATGTATAGTTATGAGGTACTTCCAAAACATTACAAGCCAAACTGTAATCACCTTTCATATTCCAATAAAGGATTTTGAAATAGATAGAATGAAACTTGCATGAGTAGTTGCCTAATCTGTGACAATACTCCGATTAAATATCCAAATATTTTCACATGCCAATGACAGAGAAGAAAACTGATATACTTAAAAATGAAAAACTGTTTAATCCTACTTTTATGTAAGGCAATACGATAATTAATCTGTTATGCAGTCTGTAATGATGTTTTGCTTCCTTGTGATTCTACGGCACAGTTCTTTAAAAAAAAAAAAAAAAAAAGATACCATATCTTGTTAATAGATATTACAATGACTGAAACAAAAATTTAAACCTCTCCAGGTTTAAATGATCTGACATCTGAAA
Seq C2 exon
CTGCAAATTCTCCGGGACCTTTTAGAAACACTAATATGTCTAAAGCAGCACAAACACATAAACTACGGAAGCTGAGAGCTCCATCTAAATGCAGAGAATGTGACAGCTTAGTGGTATTTCATGGAGCTGAATGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683:ENSGALT00000009113:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.468
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(57.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTTTAAAAGACGACTTCCACG
R:
CTCCTCACATTCAGCTCCATGA
Band lengths:
239-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]