MmuINT0018093 @ mm10
Intron Retention
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:122005655-122006915:+
Coord C1 exon
chr3:122005655-122005753
Coord A exon
chr3:122005754-122006775
Coord C2 exon
chr3:122006776-122006915
Length
1022 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTG
5' ss Score
4.41
3' ss Seq
TGTACTGTTTCTGTTACAAGGAC
3' ss Score
6.9
Exon sequences
Seq C1 exon
GAGACTTTCATCGGAAACTTCCACGGACTCCATCCAGTGGAACCATGTCTTCTGCTGATGATCTCGATGAGAGAGAGCCACCGTCCCCTTCAGAAGCTG
Seq A exon
GTACTGCACTCTCCTCAGTTAGGACCCACTAAACTAGTTGGAATAGTGGCAGTGCATAATGCTAGGTCATTAGTTTGTTATATGGATCTGCTTGTTTATGCATACATATGGATTGATGATGAACTGATCAAATGATCAAAATATATCTACAAGAATAAGAAATAAAGTTACTAGATCTAAAATTACTGGCAGTGTGTGAACAGCAATCCGTATAGTGTTCTTTCATAATTCCAATACAGTGACTTTCTGTAAAAAGCATGGCACTGCCTACATTCTGGAAAAGCTCATTCTTAGTAGTGCAGGAACTATGGGCACTGAGAAAACCTCAGTGGTAAAACTCTTCATTACTGTGCACGAAGCCCTGCCTTTGCCCAAGTACTGCAAAACAACAATTACACTAACGAGGAAACCGTAAGAAGCAAGGCAGGAGAGCAGATAAATGTTCTCTCAAGGACGGGGAAAGTGTGGATGTTTAGGATACAAAAATCATTTACCTTCGTGACTTGAATTGAACTGATAGAAATTTGTTTTTGTTTCTTTGGTATACTATTCTTTTGGCAGAATTTCACAAATTAAAAAGTATCTTACTTCCACTATGATTAAGAATATAACTAGTAACTAATCTATAATTTTATAAGACTAGTAAGTACTGTCTTTAATGCACATATTGCTCCCATACAAGCTTCATGTAACTCACTCTTTTCAAGTAGTGACTGAGTTTTCTTAGAAATATAATGCCACTCATAAACACACTGCTCTTAACAGGAATATTAATAAAAGCATAAATTTGTTTATCTTGGGGATACTGTGTCTTGGCATCTTAGAATTAGCTTACTTACTGGTTTGGTGATGAGTATTAAAGCATTTGAAGTGTGGAATTATATCTATAAGTTGTTTTTGATGTTAGGAACCCCAGGCAATAGTTTTTTGTAATATGTAGATGACTGAAAAGTATAAGGATTGCTTATAATACATAAAGATTTTCTCATCTTTCCATTCTCGTGTACTGTTTCTGTTACAAG
Seq C2 exon
GACCCAATTCCCTCGGAGCATTTAAGAAAACTTTGATGTCAAAGGCAGCTCTCACTCACAAGTTTCGCAAGTTGAGATCCCCGACAAAGTGCAGGGATTGTGACGGCATCGTAATGTTCCCAGGCGTCGAGTGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831:ENSMUST00000037958:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(56.2=57.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTTTCATCGGAAACTTCC
R:
CTCTTCACACTCGACGCCTG
Band lengths:
239-1261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types