MmuALTD1029690-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000049044 | Rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:1917723]
Coordinates
chr2:72242294-72242792:+
Coord C1 exon
chr2:72242294-72242321
Coord A exon
chr2:72242322-72242560
Coord C2 exon
chr2:72242728-72242792
Length
239 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TGGCTTTTATTTCTTTACAGATA
3' ss Score
10.41
Exon sequences
Seq C1 exon
ATCCCTTTCATGCCCTTGCTTATTAAAG
Seq A exon
GTAATCCGAAGGCACAGCCAGGCCAGGTGGGAGGGGCCAGGCCAGGTGGGAGGGGCCAGGCCAGGCGGGAGGGGCACGCACCAGAAGGTTCTCTGTCTTTCCATCTCCCTGGGCTCCTGCTCTTGGGCCCCAGTCTCTTAAAGGAGTGGGAAGGTGGGAACACAGCGATATGAAAAGCCCATGATTTTGAAGCTTTTGGAGTGAAAAGGGTTTACGGGTAGAGATTTTACTAACCTCAG
Seq C2 exon
ATATGACATTTACTCATGAGGGGAACAAGACGTTCATTGACAATCTAGTAAACTTTGAAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049044-80-58,81-58-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.7=100)
A:
NA
C2:
PF0061714=RasGEF=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types