MmuEX0038801 @ mm10
Exon Skipping
Gene
ENSMUSG00000049044 | Rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:1917723]
Coordinates
chr2:72241427-72252994:+
Coord C1 exon
chr2:72241427-72241477
Coord A exon
chr2:72242234-72242321
Coord C2 exon
chr2:72252940-72252994
Length
88 bp
Sequences
Splice sites
3' ss Seq
CACTTTTGTTTTCTCCCAAGGAT
3' ss Score
8.44
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAACTGCCGAGCAAGTTTAAGAAGTTCTATGCGGAGTTTGAGAGCTTGATG
Seq A exon
GATCCTTCCAGAAACCACAGGGCATACAGGCTGACAGCAGCCAAGCTGGAGCCCCCTCTCATCCCTTTCATGCCCTTGCTTATTAAAG
Seq C2 exon
CGCATGATTGCAAACACTGCCAGAACAGTACGGTACTACAGGAGCCAGCCCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049044_MULTIEX2-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
PF0061714=RasGEF=FE(15.7=100)
C2:
PF0061714=RasGEF=PD(0.5=5.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCGAGCAAGTTTAAGAAGT
R:
GAAGGGCTGGCTCCTGTAGTA
Band lengths:
103-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types