GgaEX6042295 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18763160-18764315:-
Coord C1 exon
chr7:18764265-18764315
Coord A exon
chr7:18763564-18763651
Coord C2 exon
chr7:18763160-18763224
Length
88 bp
Sequences
Splice sites
3' ss Seq
TATTTGATTTTTTTCTTAAGGAT
3' ss Score
8.01
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAACTTCCAAGCAAGTTCAAGAAGATCTATGCAGAATTTGAAAGCTTAATG
Seq A exon
GATCCATCAAGAAACCATAGGGCCTACAGACTAACTGTAGCTAAATTGGATCCTCCGATAATTCCTTTCATGCCTCTGCTTATAAAAG
Seq C2 exon
ACATGACGTTTACTCATGAGGGAAATAAGACACTCACTGACAATCTAGTAAACTTCGAAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'38-41,'38-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
PF0061714=RasGEF=FE(15.7=100)
C2:
PF0061714=RasGEF=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTCCAAGCAAGTTCAAGAAGA
R:
TTTCGAAGTTTACTAGATTGTCAGTG
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]