MmuALTD1029717-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56320885-56322034:-
Coord C1 exon
chr19:56321723-56322034
Coord A exon
NA
Coord C2 exon
chr19:56320885-56321016
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGC
5' ss Score
4.72
3' ss Seq
TGCTCCTTCCTTCCCTCAAGGTC
3' ss Score
9.95
Exon sequences
Seq C1 exon
TTCCGGTACAAAGAGGCATTTCTGAGGGACCGGGGCCTACAGATTGGGTACCGTAGCATCAGTGACGACCCGAGGACGACGCACTTCCTCCGAGTCGGCAGGCTCCAGAGTGACAACGAGTACAGGAAGGCCTTTGCCAAAGGTCGCTCCCAGTTCCACAGTCGCGCTGACCAACCAGGCTTCCTCCAGGCCAAGAGGAGCCAGCAGCTGGCCAGCGATGTCCTCTATAGGCAGCCACTGCCTCAGCACACCAGCGACCCAGAACAGCTGGGCCTGAAGCATGCCCGGAAAGCCCATCAGCTGCAGAGTGAT
Seq A exon
NA
Seq C2 exon
GTCAAGTACAAATCTGACTTGAACCTGACTCGAGGTGTTGGCTGGACCCCTCCTGGCTCCTACAAAGTGGAAATGGCTCGACGGGCTGCAGAACTGGCCAACAGGAGGGGCCCGGGGATCCGGGGGGCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-47-48,48-48-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=NA C2=0.618
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=WD(100=21.2),PF0088013=Nebulin=PU(53.6=14.4)
A:
NA
C2:
PF0088013=Nebulin=PD(39.3=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCGTAGCATCAGTGACG
R:
CCGTCGAGCCATTTCCACTTT
Band lengths:
350-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types