MmuALTD1030138-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000050846 | Zfp623
Description
zinc finger protein 623 [Source:MGI Symbol;Acc:MGI:1926084]
Coordinates
chr15:75941059-75949377:+
Coord C1 exon
chr15:75941059-75941159
Coord A exon
NA
Coord C2 exon
chr15:75947123-75949377
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
AGCTTCTTTTCTCATTTCAGATT
3' ss Score
9.85
Exon sequences
Seq C1 exon
GGGGCGTGCGGCAGCGGTGCGGGCTTTGTGGCCGCCCGGGGTTACCCGCCTGGATGCTGCTCGGCTTGGTTCCGCGCCGTCCTCTCGCCGCCGAGCTCCGG
Seq A exon
NA
Seq C2 exon
ATTCTCCTGTAGGGAGCCAGTGGCAAGAAGGGGATCCGGAAGCCTGAATTTCTGGGGATGAAAATTCACATAAGATGATGTCAGACGAACTCACAGTGCTGGAGCCCTCTGCCTCTGAGTCTCGGGAATTTCATGAAGACAGATTGGCGCAGCTGTTGGGGAACCCAGACAAGCAGAGCTTGGAGAGTCCCTCCTCTCAGGACGGGGGCTTCACTCAGATGACAGTGACCCACTGGAAGATTCAAACAGGAGACACAGCCCAAACGTGCAGTAAGTCAGGAAGAAACCCCATTCTCAATTCAAACCTTCTTATACTTCAGAGAGAACTCATAGATGCGGAGGCCCGTTCCTGTGGTGGTGGTGGCAAAGGCTTCCCATTTAATTCAGATGTAGTTCCGCATCAGATCTCGCACACGGGGGAGAAGCCTTACAAATGTGATCATTGTGGGAAAGGCTTCAGTCAGACCTCCCTCCTCACTGAACACCAGAGAGTCCACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050846-0-1,1-1,2-1,3-1-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCCGCCTGGATGCTG
R:
AGTGGGTCACTGTCATCTGAGT
Band lengths:
295-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types