MmuINT0179609 @ mm10
Intron Retention
Gene
ENSMUSG00000050846 | Zfp623
Description
zinc finger protein 623 [Source:MGI Symbol;Acc:MGI:1926084]
Coordinates
chr15:75940952-75949377:+
Coord C1 exon
chr15:75940952-75941159
Coord A exon
chr15:75941160-75947122
Coord C2 exon
chr15:75947123-75949377
Length
5963 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
AGCTTCTTTTCTCATTTCAGATT
3' ss Score
9.85
Exon sequences
Seq C1 exon
AGGAATCTGGCCCGGAAGTCTGTGACAGGGAGACGGCCCCGGCCCCCATTCTTATCCTAGAGTGCCTACGGATGTCCTCCGGGCGGAGCCTCGGGCAGTTTCCGGCCGGGGCGTGCGGCAGCGGTGCGGGCTTTGTGGCCGCCCGGGGTTACCCGCCTGGATGCTGCTCGGCTTGGTTCCGCGCCGTCCTCTCGCCGCCGAGCTCCGG
Seq A exon
GTGAGTGAGGCGGAGCGGCTCGCGCGGGTGGGCGGGCTCGTGACCGGCGGGGCTCAGCGAGTTGGTTGGTGTCCCGGGCCGGCTGCACTTCGCTTTGGCCTCTGTCCGTAGCTCCTCGCTTGGTTCGGGCCGGAGCCTTGCGTCTCCTCGCCGAGCTGCGGGCGGTAGATGCATGGACCGATCGTCCGCAGACATCGAGGCCCTCGAGGGTTGCACACTCGGCCTCGGCGCCTGCAGGTCGGGCCCCCGGATGGCTGCTTGAAGGCTAAGCCGCTCAGGTGATGGAATGCAGGTGCGCGCCACGCTGCTCTTCGGCTTGGACCTTGCCCTCCTGCCTTCTGCCTTCCCTCAGTCCTTTCGGCCTCTGTCCGAGGGGATGCAGTGCAGGCACCCCAGTGCTTCAGGGGTTGAAGATAATATGTGTGTTGGACAGAATCAGCTCCGTATGTCATGAAGGAGGATTCTTAGGTGGGGTGAGGTGTCATACAAGCTGTTCTATTCCATGAAGTGTCTGAGTCAACGTCTATGACATCTCTGTGATAATGCCAGGGACATTTAGTCCTCTTTGCACCCGGCCCCACCGTGGTCCAGGAGTCCCCAGGGCTTGAGTGCTATGCTAGAGGTTTCCCGGGATATTAGCAGAAGAACAGTTCTAAACTCAAGTAGTTTTCCAGGTGGAGAGCTGATATTCACAATCGCCCTGTGCTCTTCTAGACATCGTTCCTTTGAGACCCATTACAATGAAAGAAACAAATGTCTTCTGATCACGAAGAAATCAGACTCCCCATGCCCCTCGCGCGCGCGCGCGCACACACACACACACACACACACACACACACACACAAACAAACATATACACATCAAGTTTTAAGGCAGAGAGCAGACCTTTGTTCCTGTCACGGATGTGGCATTGTATCTGTTTTAATACTTGGCATAATGATGGCATTCTTTTTTCATATGGGAGGTATAGAGAAACCTCACAAGCCAACACATGCAGCTATGGACACTCCTGGAGCCTTGGGGGTGGATTTCTGGTTCTGGAATGCGTTGGAGGATGATATAGAGAGAGGGTAGACCTGGGAAAGTACCCCCACTCCCCTACAAGACTTATGGTCTGATCTGGAAGTGGACGGGATGCCAGAGAAGCAGTGGGCTAGAACAAAGTGGTGTCTCTGAAGTAAATCACAGAGCCCTCTGACTGCTCTGTTGGCTTATGGAAAATGGCTGCTAAAAGGCCCTGGGCTTGTTAGGAAAAGAAGACTGTTTGTGTCAGCAGGATCCTTGTATGTAGGGGCTAGAGGTAGAGGTTGGAATAGGAGTCCTAAGAGAGCAGCCAGTCACTCGCTCTATTCTTTTTGACCTCAAATAGCATGCCTTGCACACACAGCACCCAGCTACCTCCACAGCTGCAGTGGCACATCCACAGGTTGTCAGGGACACCATGTCGAGGCCCGCCCGCCTGGTTATTCCCAAGGCTGCAGAGATGCAAGCTTTCCTGCTCCTGTTTTTCTTTATGTGTATGGGTGTCTAATGTTGGTTTTTATTCTCCTGATGGAATTGTTGTCTCTAAGGTTTACTGCCTCCATCTCCTAGCTTGCTAGTCCTGGAAGCTTCTAGCCTCTGTCCAATCTAATCTAGGCCTAAACTTGTTTTCAGCCCCTGAGACTTGCTGCTGAATAAGCTCATCCCTTCTGGTTCTTTCTGGAATCTTCTGGCTGGTTTAACTCAGCTGTTCTGTATCAAACTTGTCTCCCAGCTGACTCACTCAGTCTGGCTTCTGAATTGCTCTGCTTGGCCTCCAACTAAGTCTGGTACTCTGTTCTAATCTTCTGGCTCGTTCTCTCCTCAAACTGTCTGTAAAACTGCCTCTCTTCTTTCTCTAGACTGCGGGCCCCTTAAGTGGCTTCCCTTTCTTTTCTCTTCTAGTAAGAGTTGGTATATCCTGTTCTGTCAAATCTTTCTTGATTTGTCACCTTGTCCGCCTCTCAATCAGACATCACTTCCAAACATGGGTGCTTCCTTGTACAAACTATCTTTGCCTTCATTGTTTGGGATTAAAAGTGTGAACTAAGGGTGTGTCTGTAGTCCAGCCAGAAGGATTAAAGGTGTGTGCTAAGGGCTGAGCTAACAGTATCTTGGTGTTCACTGTGTGATCCTATCTTGCAGCATGGGTGTTTTGCCTGCTTGTTAGTCTGTCCATCATGTGTGTACCTGGTACCCTCAGAAGCCAGAAGAGGGCGTTGTATCCCCTAGAATTTGCGTTACAGAGTTGTGAGCGGCTATGGGGTTCTGGGGAACTTGAACCCGGGTGCTCTGGAAGAGTAGTCAGTGCTTTTAACTGCTCAGCCATCTCTAGCTGCCGAGTTGTAAGAGTCACCGAGAGGCACACATGATTCTAAGCTCTTCTTGTAAACAGCTGCAGGCTTGTGTCCAGGTAGCGTAGTCATTCTAAGTCTGATATAAGGGGCTGAGGTGCAGCTCACTGGTAGAGCACTTGCTTAGCATGCATAATATCCCGAGTTCCATCCTTAGCACTCCATAAAATAATAAAAGTCAGAAGGTATCGGTGGTTTCTAAAACGTGAGCGTATGCAGGTCCTTGCCAAACCCTGTGGCTGGCTGGGTTGCCTTGAACTTCCTTATACTGAATGCCAGTGAGACTCTGGTGCCACGGGCTGGCAGCACTGCCTTGCTGTAGCTTTAGGGGTTCTGAAGCTTCAGGCTTGCATGGAGCAGAGCAGAGCACTGGCCCCTGAGAACAGCCAGCTCTTAGAAGGGGTGATGGGAAAGGTTGAGCTCAAGTGTTGTCTTGGTTAGGGTTTCACACTGTGAACAGACACCATGACCAAGGTAACTTTTGTAAGGGACAATATTTAACTGGGGCTGGCTTACAGGTTCAAAGGTTCAGCCCATTATCATCAGGGTGGGAGCATCTAGGCAGGTATGCAGGAGCTGAGAGTTTTCTGTCTTGTCCCAAAGGCAAATAGGAGAAGAGTACTATCTTCCAGGCAGCTAGAACAAGGGTCTCTTAAAGCCCACCCCCACGGTGACACACTTCCTCCACAAGGCCACACACACCTCCTAATAGTGCCACTCCCTGGCCAAGCATATTCACCACAACTGTCTAGTAAGTGACTCAAGTGTTCCTGCTAATTCACCTACATACTTGGGGAAGAATGGTGGTAGGAGGGGATTGGAGAGCCTTGAAGGTTTTAAAATAGAAAGTCACCATTTCATTTATGCTTTGAAAGGGTCAGCCTGCTGGCTTTGTAGAAAGGCCGTGGAGGAGGAGAGTGTGAAGACAGGTTAGAAGACTGTCACCCTGGTGCCTTGAGAGACACCAGTAGAGGGAGCATTGAGGTTCTGAGACAGGAGCAGGGTGCAGGATAATGGCCTGGCCTACAGGTCAGAGAGCGCATAATAATACATAATACATAATAAATAATATCTTTTTTTTAAAAAAAAAGTAACAGAGGAGAGGAGATGTAAGATAAACTCAGTGACCATTGAGTGTCATTGTGGAGAGGAGAGACAGTAACTGGAGAGGAACTAGAACTTGGGAAGTTAGCTTGGTATTCATGTTCTTTGAGATAGGAAATTGGGACGTTCCCCAGAGTGCTTGAGACTAGATAAGTGTACCATTTAGTTGTTTGTTTTTCTTTTTTAAGATTTATTTATTATTATATCTATGTACACTGTAGCTGTCTTCAGACTTACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTATGAGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCGCCCCATCTCTCCAGCCCCCCATTTAGTTTTTTAAAGTGAGATGCTGATGCTCCACCTACAGGATGTCAAAGGCCTCTTGTTCCCTACTGTGTCACTTCCAGCTTGCTTTCCCCAGTTAGTGGAAGAACTCGCATTACTGTGTGCTGACTTGGAATGGCAGGCTAGAGGAGCAGAGAGGTTTTTATCTCAAGAGGGAGGGCGCGGTGGCTTGATGAGATGGGATGGGAGAAGGCCTAGAGCAAGTGGAGGTGAGGACCTTCTTCAGGTTAAGTACAGCTTGATTCCTGAAACCAGAGGGAGGAAGGCTGATGGGAACGCAGGTCAGTGGTGGAAGTGGCCATTCCTGTCTCCCTGCCTTTCCTCTCACTGAAGTAAGGGTTAAGGGGTAGGAAAAAACATTAGATATTTTAAATGCTTATTTTATGCATATGAGTGTTTTACCTCTGTGTGTCTGTGTGTGTTCGTGTGTGTCTGTGTGTGTGTGTGTGTGTACCACATGTGGTCCTGGTGCCCACAGAGGTCAGAATGTGGCATCAGATCCCCTGGAGTCACAGACAGTTGTGAGCTCCCATCGGTTTGTGGGCTGGGAACCTGGGTCCTCTATGAGAACAGCAAGTACCCTCAACCTCTGAGCTGTCTCTAGAGCTCTAGTGATGGATTAAAAAGAAGAGTTGGGTGAGTATAGAACATGGCTGACACACCCTTAGGGTGTCAGAGCTGTCAGTGTAGAGAGCAAGAGTTCAGACAGATCCAAAACAGGTGGGATCTAGCCAGAGCTGGTCTCACACAGGTGATGGGAAGAAAAGGGCAGGTAAGGTGCAGGAAAGGATTCTTTTTTTTTTTTTTAAAGATTTGTTTGTTTATTTATTTATTTATTTATTTAGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGTGTCAGATCTCCTTACAGATGGTTTTGAGCTGGGATTTGAACTCAGGACCTTTGGAAAAGCAGTCAGTGCTCTTAACCGCTGAGTCATCTCACCAGTCCATGCAGGAAAGGATTCTATACCAGTTCCTCACTGCAGGTACTGAAATCAAAGAATGCTTGAGTTTCTCAGAATGTTGTAGTTGCCAGAGTGATGGCACACACCTTTAATCTCAGCACTGGGGAGGCAGAAGTAGGTGGATCTTCGTGAGTTTGAGACCAGCTTGGTCCATATTGTGTGTTCTAAGCCAGCCAGTGCCACAGAGTGAGACCCTGCCTTAAGGAGAAAATGTGTAATGTTTGTATGCTCTCTATCTACTTACAGCTTTCTGTCCTTTAAATCATCTCGTTACTTATCACACCTAATACATTGTGACAAGTAGGTAAGTATGTTGTTTTCAAGGAATAATGGCCCTTCCCCGAAAAAGGGACACGTTCATGTTTGGTACAAATGTAGGGGTTTTGTGTGTGTGTGTGTTTGCTTGATTTTGTTAATTTCTTATCTGAGGTGGGCTAACTTTTGGGTATAGAGCCCAACCATTTATGGGGGCTAAGTAGATATAAAGTGAGAACATTGTGCCAGTGAGGCTAGGACAGGAACTGCCCGCATCACTCCAATCATTAAGGGATTTCACAGAGGGAACCAGATTATAAGGCCACTGAAAGAGGGAGAGGTTAGAAGTGTGGAGATTCTAACTGGGTTCTTGGCTTCAGGCTCAGTCACTATAGGTCAGAAATGCTGCTAGCACTGAGGCCCTGAATGCTACAAATAGCCTAAAGGGAGATGCATTCTGGGTAGGGACAAGATAAAGATCACACGATGCAGAATGTGAATGAGGGTGGTGGGCAGTCGGAGTGATAGAGTTTATTTGAGTGATCTTGGAATTACATGTCTTGGTTTTTAAGTAGAGTCCTGACTATATCCCTATCCCTCTGTCACCCACACAGGACACAAGTTAGAAGAGTGCTGTGTAGCACAGCCTATTTGTCCTAAGGTTGGCCATATCACAGGTCGGGCCGCAGGAAGCCTTCCCATGTGGGTGGCTGATTGGGGCTGGTAACAGTGAAGGTCAGAAGTGTGGGCAGAGGAGGTGCTTCCTCTCTGTCGGATGGTAGTTTAACTCCACACCTTCGGCCCGTTCTCGTTACCAAAGGGGAAAGACCAGCTTCTTTTCTCATTTCAG
Seq C2 exon
ATTCTCCTGTAGGGAGCCAGTGGCAAGAAGGGGATCCGGAAGCCTGAATTTCTGGGGATGAAAATTCACATAAGATGATGTCAGACGAACTCACAGTGCTGGAGCCCTCTGCCTCTGAGTCTCGGGAATTTCATGAAGACAGATTGGCGCAGCTGTTGGGGAACCCAGACAAGCAGAGCTTGGAGAGTCCCTCCTCTCAGGACGGGGGCTTCACTCAGATGACAGTGACCCACTGGAAGATTCAAACAGGAGACACAGCCCAAACGTGCAGTAAGTCAGGAAGAAACCCCATTCTCAATTCAAACCTTCTTATACTTCAGAGAGAACTCATAGATGCGGAGGCCCGTTCCTGTGGTGGTGGTGGCAAAGGCTTCCCATTTAATTCAGATGTAGTTCCGCATCAGATCTCGCACACGGGGGAGAAGCCTTACAAATGTGATCATTGTGGGAAAGGCTTCAGTCAGACCTCCCTCCTCACTGAACACCAGAGAGTCCACACTGGGGACAGACTCTGTGTGTGCCACGTGTGCGGGAAAGACTTCGTTCACTACGCAAGCCTGAGGGAGCATCAGCATGTCCATACTGGGGAAAAGCCGTTCAAGTGTGCACAGTGTGGAAAAGCATTTTGTCACAGTTCAGACCTGCTTCGACACCAGAGGGTTCATACCAGGGAGAGGCCTTTTGAATGCAAAGAGTGTGGGAAGGGTTTCAGTCAGAGCTCCTTACTCATTCGCCACCAAAGAATTCACACAGGAGAAAGGCCCTATGAGTGTAACGAGTGTGGGAAATCCTTCATTCGGAGTTCAAGCCTTATCCGCCATTACCAGATCCACACAGAAGTTAAACAGTATGAGTGCAGAGACTGCGGCAAAGCCTTCCGACACCGCTCGGACCTCATCGAGCACCAGAGGATTCACACTGGAGAGCGGCCCTTCGAGTGTCAGGAGTGTGGGAAGGCCTTTATTCGGAGCTCGAAACTCATTCAGCACCAGCGGATTCACACGGGAGAGCGGCCTTACGTGTGCAACGAGTGTGGGAAGCGTTTCAGTCAGACATCCAACTTCACCCAGCACCAGCGAATCCACAGTGGAGAAAAACTCTATGAGTGTAACGAATGTGGGAAGGCGTTCTTTCTGAGCTCATACCTCATACGACACCAGAAGATCCACACTGGTGAACGGGTGTATGAGTGTAAGGAGTGTGGGAAGGCTTTCCTGCAGAAGGCCCACCTCACTGAGCATCAGAAGATCCACACTGGAGACAGACCCTTTGAGTGCAAAGACTGTGGGAAAGCCTTCATCCAGAGTTCTAAGCTATTGCTGCATCAGATTGTTCATACCGGGGAGAAGCCCTATGTGTGCAGTTACTGCGGGAAAGGCTTTATTCAGAGATCCAACTTCCTTCAGCACCAGAAGATGCACACGGAAGAGAAGCGCTACACGTATAGCCAACTTGGGAAAGATCTTACCCCACCCCCAGATCTTGTCCACCAGGAGGATCTTTCCCTGAGTGAGACCTCCGTTCATTTAGGAGAGAGGTCTACAGATCGGGAGTGTTGTGGAAATAATTTATAAGACAGTCACTCTGAGTCGGATGGTGCTTCTAAACAGGCATCCTTAGTACATATATGGCTTAGAAGATGCGGATTGTCACAGTTTTTCAAGTCATTGATAGGCTGTTACTGGTCTGTTGTCTGTCACCAAGGCAGGCAAGCCAAAGGACTAGACAGCTGATCTTGAGCTGTTCACTGAGGGAGAACCTCTAGAGAATTTTCTAGATTTTATTTGAAGTTACAACACACTCTCAAGTACTTTCAAAGAAGAACTGTATTGTTACTTGAGAAATGGTTCCCTGTCTGAAAGGTTAGAGAAAGGGGCTTTTCTCATGCAAAACTGCAAGTCGGTTCCCTGTTGTCTGGGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGGTAATGCAGTTGATGCGATTGCCACCGCATCCTCCAGGCTGCTCCCACTCCTGTCCCAGTGTCTCCCAGTCGCTCCTGGTCATTGTGTATCATTTCTCAGGCGTCATGGCCAAAAGTGCTTCCCTGGTACTGAGCTGGGTTTGTGTCTTGTGCTTCTGTCGCTCAGTGTTCACCACTGCTACTGTACTTGCTATTAAATACCACAATCATGAACCTTCTCTTTCCTGTTTTGCTGTTTCCCCGAGGACACTAAGGATGTATCATTGGCTCCTATGTCCCTAGTGTCTCGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050846:ENSMUST00000037260:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types