Special

MmuINT0179609 @ mm9

Intron Retention

Gene
ENSMUSG00000050846 | Zfp623
Description
zinc finger protein 623 [Source:MGI Symbol;Acc:MGI:1926084]
Coordinates
chr15:75771382-75779830:+
Coord C1 exon
chr15:75771382-75771589
Coord A exon
chr15:75771590-75777552
Coord C2 exon
chr15:75777553-75779830
Length
5963 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
AGCTTCTTTTCTCATTTCAGATT
3' ss Score
9.85
Exon sequences
Seq C1 exon
AGGAATCTGGCCCGGAAGTCTGTGACAGGGAGACGGCCCCGGCCCCCATTCTTATCCTAGAGTGCCTACGGATGTCCTCCGGGCGGAGCCTCGGGCAGTTTCCGGCCGGGGCGTGCGGCAGCGGTGCGGGCTTTGTGGCCGCCCGGGGTTACCCGCCTGGATGCTGCTCGGCTTGGTTCCGCGCCGTCCTCTCGCCGCCGAGCTCCGG
Seq A exon
GTGAGTGAGGCGGAGCGGCTCGCGCGGGTGGGCGGGCTCGTGACCGGCGGGGCTCAGCGAGTTGGTTGGTGTCCCGGGCCGGCTGCACTTCGCTTTGGCCTCTGTCCGTAGCTCCTCGCTTGGTTCGGGCCGGAGCCTTGCGTCTCCTCGCCGAGCTGCGGGCGGTAGATGCATGGACCGATCGTCCGCAGACATCGAGGCCCTCGAGGGTTGCACACTCGGCCTCGGCGCCTGCAGGTCGGGCCCCCGGATGGCTGCTTGAAGGCTAAGCCGCTCAGGTGATGGAATGCAGGTGCGCGCCACGCTGCTCTTCGGCTTGGACCTTGCCCTCCTGCCTTCTGCCTTCCCTCAGTCCTTTCGGCCTCTGTCCGAGGGGATGCAGTGCAGGCACCCCAGTGCTTCAGGGGTTGAAGATAATATGTGTGTTGGACAGAATCAGCTCCGTATGTCATGAAGGAGGATTCTTAGGTGGGGTGAGGTGTCATACAAGCTGTTCTATTCCATGAAGTGTCTGAGTCAACGTCTATGACATCTCTGTGATAATGCCAGGGACATTTAGTCCTCTTTGCACCCGGCCCCACCGTGGTCCAGGAGTCCCCAGGGCTTGAGTGCTATGCTAGAGGTTTCCCGGGATATTAGCAGAAGAACAGTTCTAAACTCAAGTAGTTTTCCAGGTGGAGAGCTGATATTCACAATCGCCCTGTGCTCTTCTAGACATCGTTCCTTTGAGACCCATTACAATGAAAGAAACAAATGTCTTCTGATCACGAAGAAATCAGACTCCCCATGCCCCTCGCGCGCGCGCGCGCACACACACACACACACACACACACACACACACACAAACAAACATATACACATCAAGTTTTAAGGCAGAGAGCAGACCTTTGTTCCTGTCACGGATGTGGCATTGTATCTGTTTTAATACTTGGCATAATGATGGCATTCTTTTTTCATATGGGAGGTATAGAGAAACCTCACAAGCCAACACATGCAGCTATGGACACTCCTGGAGCCTTGGGGGTGGATTTCTGGTTCTGGAATGCGTTGGAGGATGATATAGAGAGAGGGTAGACCTGGGAAAGTACCCCCACTCCCCTACAAGACTTATGGTCTGATCTGGAAGTGGACGGGATGCCAGAGAAGCAGTGGGCTAGAACAAAGTGGTGTCTCTGAAGTAAATCACAGAGCCCTCTGACTGCTCTGTTGGCTTATGGAAAATGGCTGCTAAAAGGCCCTGGGCTTGTTAGGAAAAGAAGACTGTTTGTGTCAGCAGGATCCTTGTATGTAGGGGCTAGAGGTAGAGGTTGGAATAGGAGTCCTAAGAGAGCAGCCAGTCACTCGCTCTATTCTTTTTGACCTCAAATAGCATGCCTTGCACACACAGCACCCAGCTACCTCCACAGCTGCAGTGGCACATCCACAGGTTGTCAGGGACACCATGTCGAGGCCCGCCCGCCTGGTTATTCCCAAGGCTGCAGAGATGCAAGCTTTCCTGCTCCTGTTTTTCTTTATGTGTATGGGTGTCTAATGTTGGTTTTTATTCTCCTGATGGAATTGTTGTCTCTAAGGTTTACTGCCTCCATCTCCTAGCTTGCTAGTCCTGGAAGCTTCTAGCCTCTGTCCAATCTAATCTAGGCCTAAACTTGTTTTCAGCCCCTGAGACTTGCTGCTGAATAAGCTCATCCCTTCTGGTTCTTTCTGGAATCTTCTGGCTGGTTTAACTCAGCTGTTCTGTATCAAACTTGTCTCCCAGCTGACTCACTCAGTCTGGCTTCTGAATTGCTCTGCTTGGCCTCCAACTAAGTCTGGTACTCTGTTCTAATCTTCTGGCTCGTTCTCTCCTCAAACTGTCTGTAAAACTGCCTCTCTTCTTTCTCTAGACTGCGGGCCCCTTAAGTGGCTTCCCTTTCTTTTCTCTTCTAGTAAGAGTTGGTATATCCTGTTCTGTCAAATCTTTCTTGATTTGTCACCTTGTCCGCCTCTCAATCAGACATCACTTCCAAACATGGGTGCTTCCTTGTACAAACTATCTTTGCCTTCATTGTTTGGGATTAAAAGTGTGAACTAAGGGTGTGTCTGTAGTCCAGCCAGAAGGATTAAAGGTGTGTGCTAAGGGCTGAGCTAACAGTATCTTGGTGTTCACTGTGTGATCCTATCTTGCAGCATGGGTGTTTTGCCTGCTTGTTAGTCTGTCCATCATGTGTGTACCTGGTACCCTCAGAAGCCAGAAGAGGGCGTTGTATCCCCTAGAATTTGCGTTACAGAGTTGTGAGCGGCTATGGGGTTCTGGGGAACTTGAACCCGGGTGCTCTGGAAGAGTAGTCAGTGCTTTTAACTGCTCAGCCATCTCTAGCTGCCGAGTTGTAAGAGTCACCGAGAGGCACACATGATTCTAAGCTCTTCTTGTAAACAGCTGCAGGCTTGTGTCCAGGTAGCGTAGTCATTCTAAGTCTGATATAAGGGGCTGAGGTGCAGCTCACTGGTAGAGCACTTGCTTAGCATGCATAATATCCCGAGTTCCATCCTTAGCACTCCATAAAATAATAAAAGTCAGAAGGTATCGGTGGTTTCTAAAACGTGAGCGTATGCAGGTCCTTGCCAAACCCTGTGGCTGGCTGGGTTGCCTTGAACTTCCTTATACTGAATGCCAGTGAGACTCTGGTGCCACGGGCTGGCAGCACTGCCTTGCTGTAGCTTTAGGGGTTCTGAAGCTTCAGGCTTGCATGGAGCAGAGCAGAGCACTGGCCCCTGAGAACAGCCAGCTCTTAGAAGGGGTGATGGGAAAGGTTGAGCTCAAGTGTTGTCTTGGTTAGGGTTTCACACTGTGAACAGACACCATGACCAAGGTAACTTTTGTAAGGGACAATATTTAACTGGGGCTGGCTTACAGGTTCAAAGGTTCAGCCCATTATCATCAGGGTGGGAGCATCTAGGCAGGTATGCAGGAGCTGAGAGTTTTCTGTCTTGTCCCAAAGGCAAATAGGAGAAGAGTACTATCTTCCAGGCAGCTAGAACAAGGGTCTCTTAAAGCCCACCCCCACGGTGACACACTTCCTCCACAAGGCCACACACACCTCCTAATAGTGCCACTCCCTGGCCAAGCATATTCACCACAACTGTCTAGTAAGTGACTCAAGTGTTCCTGCTAATTCACCTACATACTTGGGGAAGAATGGTGGTAGGAGGGGATTGGAGAGCCTTGAAGGTTTTAAAATAGAAAGTCACCATTTCATTTATGCTTTGAAAGGGTCAGCCTGCTGGCTTTGTAGAAAGGCCGTGGAGGAGGAGAGTGTGAAGACAGGTTAGAAGACTGTCACCCTGGTGCCTTGAGAGACACCAGTAGAGGGAGCATTGAGGTTCTGAGACAGGAGCAGGGTGCAGGATAATGGCCTGGCCTACAGGTCAGAGAGCGCATAATAATACATAATACATAATAAATAATATCTTTTTTTTAAAAAAAAAGTAACAGAGGAGAGGAGATGTAAGATAAACTCAGTGACCATTGAGTGTCATTGTGGAGAGGAGAGACAGTAACTGGAGAGGAACTAGAACTTGGGAAGTTAGCTTGGTATTCATGTTCTTTGAGATAGGAAATTGGGACGTTCCCCAGAGTGCTTGAGACTAGATAAGTGTACCATTTAGTTGTTTGTTTTTCTTTTTTAAGATTTATTTATTATTATATCTATGTACACTGTAGCTGTCTTCAGACTTACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTATGAGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCGCCCCATCTCTCCAGCCCCCCATTTAGTTTTTTAAAGTGAGATGCTGATGCTCCACCTACAGGATGTCAAAGGCCTCTTGTTCCCTACTGTGTCACTTCCAGCTTGCTTTCCCCAGTTAGTGGAAGAACTCGCATTACTGTGTGCTGACTTGGAATGGCAGGCTAGAGGAGCAGAGAGGTTTTTATCTCAAGAGGGAGGGCGCGGTGGCTTGATGAGATGGGATGGGAGAAGGCCTAGAGCAAGTGGAGGTGAGGACCTTCTTCAGGTTAAGTACAGCTTGATTCCTGAAACCAGAGGGAGGAAGGCTGATGGGAACGCAGGTCAGTGGTGGAAGTGGCCATTCCTGTCTCCCTGCCTTTCCTCTCACTGAAGTAAGGGTTAAGGGGTAGGAAAAAACATTAGATATTTTAAATGCTTATTTTATGCATATGAGTGTTTTACCTCTGTGTGTCTGTGTGTGTTCGTGTGTGTCTGTGTGTGTGTGTGTGTGTACCACATGTGGTCCTGGTGCCCACAGAGGTCAGAATGTGGCATCAGATCCCCTGGAGTCACAGACAGTTGTGAGCTCCCATCGGTTTGTGGGCTGGGAACCTGGGTCCTCTATGAGAACAGCAAGTACCCTCAACCTCTGAGCTGTCTCTAGAGCTCTAGTGATGGATTAAAAAGAAGAGTTGGGTGAGTATAGAACATGGCTGACACACCCTTAGGGTGTCAGAGCTGTCAGTGTAGAGAGCAAGAGTTCAGACAGATCCAAAACAGGTGGGATCTAGCCAGAGCTGGTCTCACACAGGTGATGGGAAGAAAAGGGCAGGTAAGGTGCAGGAAAGGATTCTTTTTTTTTTTTTTAAAGATTTGTTTGTTTATTTATTTATTTATTTATTTAGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGTGTCAGATCTCCTTACAGATGGTTTTGAGCTGGGATTTGAACTCAGGACCTTTGGAAAAGCAGTCAGTGCTCTTAACCGCTGAGTCATCTCACCAGTCCATGCAGGAAAGGATTCTATACCAGTTCCTCACTGCAGGTACTGAAATCAAAGAATGCTTGAGTTTCTCAGAATGTTGTAGTTGCCAGAGTGATGGCACACACCTTTAATCTCAGCACTGGGGAGGCAGAAGTAGGTGGATCTTCGTGAGTTTGAGACCAGCTTGGTCCATATTGTGTGTTCTAAGCCAGCCAGTGCCACAGAGTGAGACCCTGCCTTAAGGAGAAAATGTGTAATGTTTGTATGCTCTCTATCTACTTACAGCTTTCTGTCCTTTAAATCATCTCGTTACTTATCACACCTAATACATTGTGACAAGTAGGTAAGTATGTTGTTTTCAAGGAATAATGGCCCTTCCCCGAAAAAGGGACACGTTCATGTTTGGTACAAATGTAGGGGTTTTGTGTGTGTGTGTGTTTGCTTGATTTTGTTAATTTCTTATCTGAGGTGGGCTAACTTTTGGGTATAGAGCCCAACCATTTATGGGGGCTAAGTAGATATAAAGTGAGAACATTGTGCCAGTGAGGCTAGGACAGGAACTGCCCGCATCACTCCAATCATTAAGGGATTTCACAGAGGGAACCAGATTATAAGGCCACTGAAAGAGGGAGAGGTTAGAAGTGTGGAGATTCTAACTGGGTTCTTGGCTTCAGGCTCAGTCACTATAGGTCAGAAATGCTGCTAGCACTGAGGCCCTGAATGCTACAAATAGCCTAAAGGGAGATGCATTCTGGGTAGGGACAAGATAAAGATCACACGATGCAGAATGTGAATGAGGGTGGTGGGCAGTCGGAGTGATAGAGTTTATTTGAGTGATCTTGGAATTACATGTCTTGGTTTTTAAGTAGAGTCCTGACTATATCCCTATCCCTCTGTCACCCACACAGGACACAAGTTAGAAGAGTGCTGTGTAGCACAGCCTATTTGTCCTAAGGTTGGCCATATCACAGGTCGGGCCGCAGGAAGCCTTCCCATGTGGGTGGCTGATTGGGGCTGGTAACAGTGAAGGTCAGAAGTGTGGGCAGAGGAGGTGCTTCCTCTCTGTCGGATGGTAGTTTAACTCCACACCTTCGGCCCGTTCTCGTTACCAAAGGGGAAAGACCAGCTTCTTTTCTCATTTCAG
Seq C2 exon
ATTCTCCTGTAGGGAGCCAGTGGCAAGAAGGGGATCCGGAAGCCTGAATTTCTGGGGATGAAAATTCACATAAGATGATGTCAGACGAACTCACAGTGCTGGAGCCCTCTGCCTCTGAGTCTCGGGAATTTCATGAAGACAGATTGGCGCAGCTGTTGGGGAACCCAGACAAGCAGAGCTTGGAGAGTCCCTCCTCTCAGGACGGGGGCTTCACTCAGATGACAGTGACCCACTGGAAGATTCAAACAGGAGACACAGCCCAAACGTGCAGTAAGTCAGGAAGAAACCCCATTCTCAATTCAAACCTTCTTATACTTCAGAGAGAACTCATAGATGCGGAGGCCCGTTCCTGTGGTGGTGGTGGCAAAGGCTTCCCATTTAATTCAGATGTAGTTCCGCATCAGATCTCGCACACGGGGGAGAAGCCTTACAAATGTGATCATTGTGGGAAAGGCTTCAGTCAGACCTCCCTCCTCACTGAACACCAGAGAGTCCACACTGGGGACAGACTCTGTGTGTGCCACGTGTGCGGGAAAGACTTCGTTCACTACGCAAGCCTGAGGGAGCATCAGCATGTCCATACTGGGGAAAAGCCGTTCAAGTGTGCACAGTGTGGAAAAGCATTTTGTCACAGTTCAGACCTGCTTCGACACCAGAGGGTTCATACCAGGGAGAGGCCTTTTGAATGCAAAGAGTGTGGGAAGGGTTTCAGTCAGAGCTCCTTACTCATTCGCCACCAAAGAATTCACACAGGAGAAAGGCCCTATGAGTGTAACGAGTGTGGGAAATCCTTCATTCGGAGTTCAAGCCTTATCCGCCATTACCAGATCCACACAGAAGTTAAACAGTATGAGTGCAGAGACTGCGGCAAAGCCTTCCGACACCGCTCGGACCTCATCGAGCACCAGAGGATTCACACTGGAGAGCGGCCCTTCGAGTGTCAGGAGTGTGGGAAGGCCTTTATTCGGAGCTCGAAACTCATTCAGCACCAGCGGATTCACACGGGAGAGCGGCCTTACGTGTGCAACGAGTGTGGGAAGCGTTTCAGTCAGACATCCAACTTCACCCAGCACCAGCGAATCCACAGTGGAGAAAAACTCTATGAGTGTAACGAATGTGGGAAGGCGTTCTTTCTGAGCTCATACCTCATACGACACCAGAAGATCCACACTGGTGAACGGGTGTATGAGTGTAAGGAGTGTGGGAAGGCTTTCCTGCAGAAGGCCCACCTCACTGAGCATCAGAAGATCCACACTGGAGACAGACCCTTTGAGTGCAAAGACTGTGGGAAAGCCTTCATCCAGAGTTCTAAGCTATTGCTGCATCAGATTGTTCATACCGGGGAGAAGCCCTATGTGTGCAGTTACTGCGGGAAAGGCTTTATTCAGAGATCCAACTTCCTTCAGCACCAGAAGATGCACACGGAAGAGAAGCGCTACACGTATAGCCAACTTGGGAAAGATCTTACCCCACCCCCAGATCTTGTCCACCAGGAGGATCTTTCCCTGAGTGAGACCTCCGTTCATTTAGGAGAGAGGTCTACAGATCGGGAGTGTTGTGGAAATAATTTATAAGACAGTCACTCTGAGTCGGATGGTGCTTCTAAACAGGCATCCTTAGTACATATATGGCTTAGAAGATGCGGATTGTCACAGTTTTTCAAGTCATTGATAGGCTGTTACTGGTCTGTTGTCTGTCACCAAGGCAGGCAAGCCAAAGGACTAGACAGCTGATCTTGAGCTGTTCACTGAGGGAGAACCTCTAGAGAATTTTCTAGATTTTATTTGAAGTTACAACACACTCTCAAGTACTTTCAAAGAAGAACTGTATTGTTACTTGAGAAATGGTTCCCTGTCTGAAAGGTTAGAGAAAGGGGCTTTTCTCATGCAAAACTGCAAGTCGGTTCCCTGTTGTCTGGGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGGTAATGCAGTTGATGCGATTGCCACCGCATCCTCCAGGCTGCTCCCACTCCTGTCCCAGTGTCTCCCAGTCGCTCCTGGTCATTGTGTATCATTTCTCAGGCGTCATGGCCAAAAGTGCTTCCCTGGTACTGAGCTGGGTTTGTGTCTTGTGCTTCTGTCGCTCAGTGTTCACCACTGCTACTGTACTTGCTATTAAATACCACAATCATGAACCTTCTCTTTCCTGTTTTGCTGTTTCCCCGAGGACACTAAGGATGTATCATTGGCTCCTATGTCCCTAGTGTCTCGCACATGACAATAAACAAAACAAAAATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050846-Zfp623:NM_030199:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127602=Zn_Tnp_IS1595=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000036049, ENSMUSP00000125882
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr8:144718586-144732067 
ALTERNATIVE
HsaINT0187914
(ZNF623)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr14:2267753-2274459 
Chicken
(galGal4)
chr14:12431987-12432171 
Chicken
(galGal3)
chrUn_random:54546721-54546874 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"