MmuALTD1030363-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120479721-120489210:+
Coord C1 exon
chr7:120479721-120479859
Coord A exon
chr7:120479860-120479871
Coord C2 exon
chr7:120489112-120489210
Length
12 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCTTCCTTCTTTCTTCACAGATT
3' ss Score
12.61
Exon sequences
Seq C1 exon
GTGCTGGATATCACATCGTCATGGAGAAGCAACAATATTGTGATGTTGATAATATCATTGCAATGATTCAGCAGCATGTTCCAGGTGCTGTGTTGGAAAATAATATAGAAAATGAATTATCATTTATCCTACCCAAAAA
Seq A exon
GTATGTATCAAG
Seq C2 exon
ATTTGAAACTTTGTTTACAGAGTTAGAAATGAGACAAAAAGCACTAGGCATTGCCAGCTTTGGAGCTTCGATCACTACAATGGAAGAGGTTTTTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-26-26,27-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGCTGTGTTGGAAAAT
R:
GCCTAGTGCTTTTTGTCTCATT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types