RnoALTD0001203-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190289998-190305748:+
Coord C1 exon
chr1:190289998-190290136
Coord A exon
chr1:190290137-190290148
Coord C2 exon
chr1:190305650-190305748
Length
12 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCTTCCTTCTTTCTTCACAGATT
3' ss Score
12.61
Exon sequences
Seq C1 exon
GTGCTGGATATCACATAGTCCTGGAGAAGGAACCATACTGTGATGTTGATAATATTATTGCAATGATTCAGCAACATGTTCCAGGTTCTATGTTGGAAAATGACATAGGAAATGAATTATCATTTATCCTACCCAAAAA
Seq A exon
GTATGTATCAAG
Seq C2 exon
ATTTGAAACTTTGTTTACAGAGTTGGAAATGAGACAAAAAGCACTAGGCATTGCCAACTTTGGAGCTTCAATCACTACAATGGAAGAGGTTTTCCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783-24-28,25-28-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAACATGTTCCAGGTTCT
R:
TGTCTCATTTCCAACTCTGTAAACA
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]