RnoEX0004786 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190289998-190305748:+
Coord C1 exon
chr1:190289998-190290148
Coord A exon
chr1:190295515-190295578
Coord C2 exon
chr1:190305650-190305748
Length
64 bp
Sequences
Splice sites
3' ss Seq
CAGTGTCCTTTGCCTTACAGAAT
3' ss Score
8.68
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGCTGGATATCACATAGTCCTGGAGAAGGAACCATACTGTGATGTTGATAATATTATTGCAATGATTCAGCAACATGTTCCAGGTTCTATGTTGGAAAATGACATAGGAAATGAATTATCATTTATCCTACCCAAAAAGTATGTATCAAG
Seq A exon
AATCTTTCCAGTTTCATGAGGTCCCATTTATCAATTCTTGATCTTAGAGCCTGAGCCATTGGAG
Seq C2 exon
ATTTGAAACTTTGTTTACAGAGTTGGAAATGAGACAAAAAGCACTAGGCATTGCCAACTTTGGAGCTTCAATCACTACAATGGAAGAGGTTTTCCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783-'25-28,'25-27,26-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000001933fB298
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAACATGTTCCAGGTTCT
R:
GGCAATGCCTAGTGCTTTTTGT
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]