MmuALTD1030563-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30325473-30326578:+
Coord C1 exon
chr2:30325473-30325535
Coord A exon
NA
Coord C2 exon
chr2:30326450-30326578
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATAGCAGGT
5' ss Score
-3.68
3' ss Seq
AGAACCCTCTCTGTTTCCAGCCA
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTTGCCTAATTCTGGAGCTGATTCATGCAATACTGAACCTGTGCCAAGAGACAGAGCTGCATA
Seq A exon
NA
Seq C2 exon
CCACACACCCAGCCTGCCTTCCCTCTGCATCTGCAGCCTGGCTTATACCGAAGCTGGACAGACCGTCATTAGCATCATGGGAATTGGTGTAGACACCATAGACATGGTGATGGCTGCTCAGCCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533-33-40,34-40-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(2.4=100)
A:
NA
C2:
PF104874=Nup188=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATACTGAACCTGTGCCA
R:
GCTTCGGTATAAGCCAGGCTG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types