MmuALTD1031230-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000054808 | Actn4
Description
actinin alpha 4 [Source:MGI Symbol;Acc:MGI:1890773]
Coordinates
chr7:28894501-28895180:-
Coord C1 exon
chr7:28895121-28895180
Coord A exon
chr7:28894911-28895120
Coord C2 exon
chr7:28894501-28894659
Length
210 bp
Sequences
Splice sites
5' ss Seq
CCTGCAAGT
5' ss Score
-0.23
3' ss Seq
CCCTTTCCCCCTCCCCACAGGGT
3' ss Score
14.2
Exon sequences
Seq C1 exon
ACAGGCAGCATGGACTCAGATGACTTCAGGGCCCTGCTTATCTCCACAGGATACAGCCTG
Seq A exon
GTATGCTGCCTCTGCCTCCCCTGCCTCTGCTCCTCCTCCTTCCCCAGCCCCCTCACTCCCTCCCGAGCTTGCCTATCTTCCTGGGGACACTCACTCCTCCAACTCCAGTGCAACATAGCCTTGCCTGCCTCCGCTGCTCTGCTGCACTCGAGGCTGGGGTCCTTCCAGTGGACACCCTCCACCCCACCCCCGAAAAACCAACCTCTTCCT
Seq C2 exon
GGTGATGCTGAGTTCAACCGGATCATGAGTGTGGTTGATCCCAACCATAGTGGCCTCGTGACCTTCCAAGCCTTCATTGACTTCATGTCAAGGGAGACCACAGACACAGACACAGCTGATCAGGTCATCGCCTCCTTCAAGGTCCTGGCAGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054808-80-59,81-59-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.419 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(37.7=87.0)
A:
NA
C2:
PF134991=EF-hand_7=PD(33.7=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCATGGACTCAGATGAC
R:
TCTCCTGCCAGGACCTTGAAG
Band lengths:
212-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types