MmuALTD1032430-4/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75662712-75665352:+
Coord C1 exon
chr2:75662712-75662714
Coord A exon
chr2:75662715-75662756
Coord C2 exon
chr2:75665252-75665352
Length
42 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AGGTGGCTATGGATCTGGAGGTG
3' ss Score
-6.15
Exon sequences
Seq C1 exon
GTG
Seq A exon
GTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAG
Seq C2 exon
GTGGAAGTGGTGGATATGGTAGCAGAAGGTTTTAAAATAAAACAGAAACGGTAGGTATCTTTATATTTTTAAAAATAATGATAAAAAAGAATATATGGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-19-39,20-39,21-39,22-39,23-39-4/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types