RnoALTD0013820-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000052968 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:RGD Symbol;Acc:727807]
Coordinates
chr3:62484786-62485080:+
Coord C1 exon
chr3:62484786-62484839
Coord A exon
chr3:62484840-62484881
Coord C2 exon
chr3:62484980-62485080
Length
42 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACCTTGCTTTTCCTCAGGAGGCT
3' ss Score
-5.6
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAACTTTATGGGACGTGGAGGAAACTTTGGTGGCG
Seq A exon
GCGGAGGAAACTTTGGGCGTGGAGGAAACTTTGGTGGAAGAG
Seq C2 exon
GCTATGGTGGTGGAGGTGGTGGCAGCAGAGGCAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATGGTAAGTCTTAAATGGTGGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052968-18-10,19-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGGATCTGGCAACTT
R:
ACTTACCATCACCTCCAAATCCA
Band lengths:
134-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]