MmuALTD1032544-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80886066-80887555:+
Coord C1 exon
chr10:80886066-80886179
Coord A exon
NA
Coord C2 exon
chr10:80887384-80887555
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
3' ss Seq
GGTGATCCTGTGTCTTGCAGACT
3' ss Score
8.04
Exon sequences
Seq C1 exon
GCCACTGCCCCGGGAATGTCTTCTCCTGTCAGAATGGTCAGTGCGTGAGCAAAGAGAACCCGGAGTGTGATGACAGAGTGGACTGCTCCGACGAGTCTGATGAGGCTCAGTGCG
Seq A exon
NA
Seq C2 exon
ACTGCGGCTGGCAGCCTGCCTGGAGGTCAGCTGGCAGGATCGTGGGAGGAGTGGAGGCGGCTCCCGGGGAGTTCCCCTGGCAGGTCAGTCTTCGAGAGAATCACGAACACTTCTGTGGCGCCACCATCATCGGTGCCAGGTGGCTGGTGTCTGCTGCCCACTGCTTCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-6-12,7-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
NA
C2:
PF0008921=Trypsin=PU(19.2=75.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAAGAGAACCCGGAGTG
R:
TCTCTCGAAGACTGACCTGCC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types