MmuALTD1032544-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80886066-80887555:+
Coord C1 exon
chr10:80886066-80886179
Coord A exon
chr10:80886180-80886244
Coord C2 exon
chr10:80887384-80887555
Length
65 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GGTGATCCTGTGTCTTGCAGACT
3' ss Score
8.04
Exon sequences
Seq C1 exon
GCCACTGCCCCGGGAATGTCTTCTCCTGTCAGAATGGTCAGTGCGTGAGCAAAGAGAACCCGGAGTGTGATGACAGAGTGGACTGCTCCGACGAGTCTGATGAGGCTCAGTGCG
Seq A exon
GTCAGTGTCTGTGTGGCCTGGGCGCTCAGCGAACGTGGCTCACAAGCTGGGAGGCGGAAAGGGAG
Seq C2 exon
ACTGCGGCTGGCAGCCTGCCTGGAGGTCAGCTGGCAGGATCGTGGGAGGAGTGGAGGCGGCTCCCGGGGAGTTCCCCTGGCAGGTCAGTCTTCGAGAGAATCACGAACACTTCTGTGGCGCCACCATCATCGGTGCCAGGTGGCTGGTGTCTGCTGCCCACTGCTTCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-6-12,7-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
NA
C2:
PF0008921=Trypsin=PU(19.2=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAAGAGAACCCGGAGTG
R:
TCTCTCGAAGACTGACCTGCC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types