MmuALTD1033266-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000062061 | Obp2a
Description
odorant binding protein 2A [Source:MGI Symbol;Acc:MGI:2387617]
Coordinates
chr2:25699955-25700843:+
Coord C1 exon
chr2:25699955-25700055
Coord A exon
NA
Coord C2 exon
chr2:25700710-25700843
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
CACAGTTTTGTCTCCTACAGTAC
3' ss Score
7.66
Exon sequences
Seq C1 exon
GATGGACAGGAGGGACATGGCTAGTGCCAAGTGGGCACACGTCCCTGTCCATGGGAGATATAAAGGGCACCCTGTGAGGAGCCAGAGGACACTCTGCCCAG
Seq A exon
NA
Seq C2 exon
TACTCTGGGATCTGGTACGCAAAGGCCATGGTACACAATGGTACCCTACCCAGTCACAAGATACCCAGTATAGTTTTCCCTGTGAGAATAATAGCTCTGGAAGAAGGAGACTTGGAGACCACAGTTGTATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062061-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(30.7=95.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGACAGGAGGGACATGGC
R:
CAGAATACAACTGTGGTCTCCAAGT
Band lengths:
235-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types