MmuALTD1033266-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000062061 | Obp2a
Description
odorant binding protein 2A [Source:MGI Symbol;Acc:MGI:2387617]
Coordinates
chr2:25699955-25700843:+
Coord C1 exon
chr2:25699955-25700055
Coord A exon
chr2:25700056-25700177
Coord C2 exon
chr2:25700710-25700843
Length
122 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGG
5' ss Score
4.17
3' ss Seq
CACAGTTTTGTCTCCTACAGTAC
3' ss Score
7.66
Exon sequences
Seq C1 exon
GATGGACAGGAGGGACATGGCTAGTGCCAAGTGGGCACACGTCCCTGTCCATGGGAGATATAAAGGGCACCCTGTGAGGAGCCAGAGGACACTCTGCCCAG
Seq A exon
GTGACCTGCCTTGTGTGAGAGCCCAGTGCCTGGAGATGAAGAGCCTGCTCCTCACCATCCTGCTGCTGGGGCTGGTGGCTGTCCTGAAGGCTCAGGAAGCCCCGCCAGATGACCTGGTGGAT
Seq C2 exon
TACTCTGGGATCTGGTACGCAAAGGCCATGGTACACAATGGTACCCTACCCAGTCACAAGATACCCAGTATAGTTTTCCCTGTGAGAATAATAGCTCTGGAAGAAGGAGACTTGGAGACCACAGTTGTATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062061-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(30.7=95.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGACAGGAGGGACATGGC
R:
CAGAATACAACTGTGGTCTCCAAGT
Band lengths:
235-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types