MmuALTD1033481-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000063047 | Zfp780b
Description
zinc finger protein 780B [Source:MGI Symbol;Acc:MGI:2444764]
Coordinates
chr7:27974753-27976833:-
Coord C1 exon
chr7:27976752-27976833
Coord A exon
chr7:27976740-27976751
Coord C2 exon
chr7:27974753-27974805
Length
12 bp
Sequences
Splice sites
5' ss Seq
AGTGTGGGT
5' ss Score
0.29
3' ss Seq
GCTTTCCTTTTGTCCCCCAGGAG
3' ss Score
10.71
Exon sequences
Seq C1 exon
TGCTGCACATCCAACCTCTGCCATTCAAACCGCATTGTCCAGCGTTTCACTGTTCCAATGAGACGACAGGGTCAGATCCCAC
Seq A exon
GTGAGTGACAGT
Seq C2 exon
GAGAGGAAGCCTGAAGAAGAATGGCCAACTCTAATTCTCAAGACATGGTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063047-3-5,4-5,5-5,6-5-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCAAACCGCATTGTCC
R:
GTTGGCCATTCTTCTTCAGGCT
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types